Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.7e-85 318.2 160 100.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 4.3e-49 198.4 120 75.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.1e-48 196.1 130 70.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.1e-48 196.1 120 76.7
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.7e-48 194.9 136 67.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.1e-48 194.1 147 67.3
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.1e-47 193.7 131 68.7
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.4e-47 193.4 135 71.1
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.8e-47 193.0 131 67.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.8e-47 193.0 130 67.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.8e-47 193.0 117 75.2
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.4e-47 192.6 122 73.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 4.0e-47 191.8 119 73.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.0e-47 191.8 122 73.0
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.8e-47 191.0 122 73.8
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-46 190.3 130 66.9
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-46 190.3 130 66.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.2e-46 190.3 121 71.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-46 189.9 133 65.4
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 2.0e-46 189.5 119 73.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.0e-46 189.5 122 73.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 2.0e-46 189.5 129 69.8
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.0e-46 189.5 122 73.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.4e-46 188.7 123 69.9
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.4e-46 188.7 119 71.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.4e-46 188.7 122 69.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 4.4e-46 188.3 126 70.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.8e-46 188.0 130 66.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.8e-46 188.0 129 71.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 7.6e-46 187.6 119 72.3
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 7.6e-46 187.6 119 74.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.6e-46 187.6 119 72.3
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 9.9e-46 187.2 122 72.1
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 9.9e-46 187.2 119 72.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 9.9e-46 187.2 119 73.1
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.7e-45 186.4 122 73.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.2e-45 186.0 119 72.3
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.8e-45 185.3 127 69.3
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.4e-45 184.5 149 63.1
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.4e-45 184.5 130 65.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 6.4e-45 184.5 132 65.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 6.4e-45 184.5 119 73.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 8.4e-45 184.1 129 69.0
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 8.4e-45 184.1 122 70.5
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 8.4e-45 184.1 129 70.5
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 8.4e-45 184.1 122 73.0
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.4e-45 184.1 130 66.2
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.1e-44 183.7 131 69.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.1e-44 183.7 119 74.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.4e-44 183.3 119 69.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.9e-44 183.0 119 71.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.9e-44 183.0 119 71.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.9e-44 183.0 119 70.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.2e-44 181.8 138 65.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 7.1e-44 181.0 119 71.4
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.2e-43 180.3 117 71.8
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.6e-43 179.9 125 66.4
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.1e-43 179.5 119 68.9
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.1e-43 179.5 125 67.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.1e-43 179.5 125 65.6
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-43 179.1 128 66.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 6.0e-43 177.9 127 63.8
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 7.8e-43 177.6 129 69.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.8e-43 177.6 118 70.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.0e-42 177.2 119 68.9
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.0e-42 177.2 130 66.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.3e-42 176.0 119 68.9
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.0e-42 175.6 119 68.1
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.9e-42 175.3 119 69.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.6e-42 174.5 129 65.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 6.6e-42 174.5 120 70.0
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 8.7e-42 174.1 122 68.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.5e-41 173.3 119 67.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.9e-41 172.9 143 57.3
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.9e-41 172.9 125 64.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-41 172.6 129 64.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 4.3e-41 171.8 125 63.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.3e-41 171.8 129 65.1
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 4.3e-41 171.8 128 61.7
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 7.3e-41 171.0 119 65.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 9.6e-41 170.6 119 67.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.2e-40 170.2 117 66.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.6e-40 169.9 128 64.1
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.6e-40 169.9 128 64.1
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.6e-40 168.7 117 67.5
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.6e-40 168.7 118 67.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.2e-40 167.9 128 63.3
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.1e-39 167.2 122 64.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.8e-39 166.4 127 62.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.1e-39 165.6 123 64.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 4.0e-39 165.2 119 63.9
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 5.3e-39 164.9 123 63.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 5.3e-39 164.9 127 60.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 6.9e-39 164.5 119 64.7
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.5e-38 163.3 117 64.1
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.6e-38 162.5 141 57.4
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 2.6e-38 162.5 125 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 3.4e-38 162.2 119 61.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-38 162.2 119 64.7
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.4e-38 162.2 117 61.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.4e-38 161.8 119 60.5
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.8e-38 161.4 127 59.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 9.9e-38 160.6 124 60.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 9.9e-38 160.6 153 51.0
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 9.9e-38 160.6 119 62.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 9.9e-38 160.6 119 62.2
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.3e-37 160.2 153 51.6
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.7e-37 159.8 122 62.3
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.9e-37 159.1 97 74.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-37 159.1 124 58.9
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.9e-37 158.3 131 55.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 6.4e-37 157.9 119 60.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 6.4e-37 157.9 153 52.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 8.4e-37 157.5 118 62.7
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-36 156.8 119 59.7
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.9e-36 156.4 128 57.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-36 156.4 135 56.3
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.9e-36 156.4 135 56.3
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.9e-36 156.4 135 56.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.4e-36 156.0 122 63.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 3.2e-36 155.6 131 55.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 5.4e-36 154.8 118 61.9
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 9.3e-36 154.1 131 56.5
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-35 153.7 110 64.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.6e-35 153.3 123 60.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.6e-35 153.3 123 60.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.6e-35 153.3 109 65.1
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.1e-35 152.9 135 55.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.7e-35 152.5 131 56.5
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.5e-35 152.1 120 59.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.5e-35 152.1 119 58.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.5e-35 152.1 126 57.1
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 4.6e-35 151.8 119 57.1
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.0e-34 150.6 119 61.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.7e-34 149.8 118 58.5
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.9e-34 148.7 113 63.7
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.7e-34 147.5 120 57.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 8.7e-34 147.5 125 56.0
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.9e-33 146.4 108 63.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.3e-33 145.6 109 63.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 5.6e-33 144.8 124 55.6
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 9.6e-33 144.1 120 57.5
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-32 143.3 118 55.1
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.2e-32 141.4 120 55.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-31 140.6 120 55.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.1e-31 140.6 126 57.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.1e-31 139.0 120 56.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.1e-31 139.0 120 57.5
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.3e-31 138.3 120 56.7
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.3e-31 138.3 125 56.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.5e-30 136.7 119 55.5
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.5e-30 135.2 119 54.6
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.7e-29 133.3 120 54.2
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.8e-29 132.1 120 55.0
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-28 130.6 119 55.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 9.3e-28 127.5 128 54.7
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.8e-26 123.2 99 60.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.7e-21 106.7 58 79.3
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 2.9e-21 105.9 79 60.8
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.0e-19 98.2 69 65.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.0e-19 98.2 69 62.3
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 8.7e-18 94.4 112 44.6
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.1e-16 89.7 81 60.5
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-16 89.4 59 67.8
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-16 89.4 59 67.8
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.1e-15 85.9 53 77.4
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 4.0e-15 85.5 62 61.3
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.3e-15 85.1 60 68.3
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 6.9e-15 84.7 61 65.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 9.0e-15 84.3 61 65.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-14 83.2 66 60.6
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.3e-13 80.5 74 54.1
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.8e-13 79.0 121 39.7
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.2e-11 73.9 59 61.0
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-11 73.6 58 63.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.7e-09 64.3 63 50.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-08 63.9 67 49.3


User provided reference genes

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