Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28286 Sapria himalayana HOM05D001318 ORTHO05D001152 9.9e-36 152.9 77 100.0
Cc06_g18910 Coffea canephora HOM05D001318 ORTHO05D001152 5.7e-07 57.4 38 68.4
Eucgr.D02368 Eucalyptus grandis HOM05D001318 ORTHO05D001152 9.7e-07 56.6 36 72.2
PSO339G2631 Papaver somniferum HOM05D001318 ORTHO05D001152 9.7e-07 56.6 49 55.1
SGA_v2.0_scaffold43G16369 Striga asiatica HOM05D001318 ORTHO05D001152 9.7e-07 56.6 38 68.4
FvH4_7g31180 Fragaria vesca HOM05D001318 ORTHO05D001152 1.3e-06 56.2 35 74.3
FAN01G1828 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-06 56.2 35 74.3
FAN06G0745 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-06 56.2 35 74.3
FAN06G4906 Fragaria x ananassa HOM05D001318 ORTHO05D001152 1.3e-06 56.2 35 74.3
CDE04G1178 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 1.7e-06 55.8 35 71.4
Dinv18740 Davidia involucrata HOM05D001318 ORTHO05D001152 1.7e-06 55.8 36 72.2
Lj7A501G46 Lonicera japonica HOM05D001318 ORTHO05D001152 1.7e-06 55.8 36 72.2
unitig_899.g14803 Utricularia gibba HOM05D001318 ORTHO05D001152 1.7e-06 55.8 35 74.3
FAN01G3170 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.2e-06 55.5 36 69.4
AT2G46420 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 2.8e-06 55.1 35 74.3
MSTRG.4811 Avicennia marina HOM05D001318 ORTHO05D001152 2.8e-06 55.1 35 74.3
MELO3C022309.2 Cucumis melo HOM05D001318 ORTHO05D001152 2.8e-06 55.1 62 48.4
CsaV3_6G008290 Cucumis sativus L. HOM05D001318 ORTHO05D001152 2.8e-06 55.1 62 48.4
FAN03G0090 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.8e-06 55.1 35 71.4
Gorai.007G108000 Gossypium raimondii HOM05D001318 ORTHO05D001152 2.8e-06 55.1 35 74.3
ClCG06G002210 Citrullus lanatus HOM05D001318 ORTHO05D001152 3.7e-06 54.7 62 48.4
unitig_736.g22812 Utricularia gibba HOM05D001318 ORTHO05D001152 3.7e-06 54.7 35 74.3
arahy.Tifrunner.gnm1.ann1.7L4C7U Arachis hypogaea HOM05D001318 ORTHO05D015967 4.8e-06 54.3 61 42.6
BcaC07g42606 Brassica carinata HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 71.4
C06p27690 Brassica napus HOM05D001318 ORTHO05D001152 4.8e-06 54.3 36 66.7
Lj1g0023709 Lotus japonicus HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 71.4
Lalb_Chr04g0254451 Lupinus albus HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 71.4
Nitab4.5_0000515g0050 Nicotiana tabacum HOM05D001318 ORTHO05D001152 4.8e-06 54.3 57 50.9
Sp5g01690 Schrenkiella parvula HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 71.4
SGA_v2.0_scaffold69G23143 Striga asiatica HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 71.4
TAR633G2548 Trochodendron aralioides HOM05D001318 ORTHO05D001152 4.8e-06 54.3 35 68.6
Atru.chr5.656 Acer truncatum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Aa31LG1G27760 Aethionema arabicum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
AL4G45720 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
AL5G44210 Arabidopsis lyrata HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
AT3G61700 Arabidopsis thaliana HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
arahy.Tifrunner.gnm1.ann1.BNGT2Q Arachis hypogaea HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
arahy.Tifrunner.gnm1.ann1.QCV352 Arachis hypogaea HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
arahy.Tifrunner.gnm1.ann1.Z287JL Arachis hypogaea HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
BcaC02g12531 Brassica carinata HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
BcaNung05605 Brassica carinata HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
A05p01350 Brassica napus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
C04p01530 Brassica napus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
BolC4t21804H Brassica oleracea HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
BraA05t19133Z Brassica rapa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Carub.0004s2912 Capsella rubella HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Carub.0005s2845 Capsella rubella HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
CARHR141700 Cardamine hirsuta HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
CARHR172010 Cardamine hirsuta HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
CiPaw.01G074900 Carya illinoinensis HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
CiPaw.02G040000 Carya illinoinensis HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
CDE10G0555 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 74.3
Ca_23541_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Ca_29804_v3 Cicer arietinum L. HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
ClCG05G000890 Citrullus lanatus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Ciclev10020704m.g Citrus clementina HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Cc11_g03600 Coffea canephora HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
COL.COLO4_06296 Corchorus olitorius HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Haze_15644 Corylus avellana HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
MELO3C006031.2 Cucumis melo HOM05D000122 ORTHO05D001152 6.3e-06 53.9 35 71.4
CsaV3_3G008120 Cucumis sativus L. HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Duzib138G0066 Durio zibethinus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Thhalv10001501m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Thhalv10006433m.g Eutrema salsugineum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
FvH4_7g16290 Fragaria vesca HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
FAN06G1952 Fragaria x ananassa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
FAN06G3084 Fragaria x ananassa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
FAN10G1039 Fragaria x ananassa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
FAN10G2334 Fragaria x ananassa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Glyma.07G056500 Glycine max HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Glyma.16G025500 Glycine max HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Gohir.A11G096700 Gossypium hirsutum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Gohir.A12G111800 Gossypium hirsutum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Gohir.D11G101400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Gohir.D12G115100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Gorai.008G124700 Gossypium raimondii HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Lj3g0015948 Lotus japonicus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Lalb_Chr10g0100471 Lupinus albus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Lalb_Chr17g0342521 Lupinus albus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Lalb_Chr17g0342651 Lupinus albus HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
MD07G1148300 Malus domestica HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Manes.01G247000 Manihot esculenta HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Manes.05G023900 Manihot esculenta HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Oeu043211.2 Olea europaea HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Phvul.010G113000 Phaseolus vulgaris HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Psat4g160600 Pisum sativum HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Potri.002G169900 Populus trichocarpa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Potri.014G097800 Populus trichocarpa HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Prupe.2G186600 Prunus persica HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Prupe.2G308500 Prunus persica HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
RcHm_v2.0_Chr1g0359301 Rosa chinensis HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Sabra02G0142400 Salix brachista HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Sabra14G0071600 Salix brachista HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Sp4g28440 Schrenkiella parvula HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Sed0018551 Sechium edule HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Sed0019577 Sechium edule HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
THA.LOC104802063 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
THA.LOC104817346 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
Thecc.01G343900 Theobroma cacao HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
TPR.G15350 Trifolium pratense HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
TWI14G1000 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
TWI23G0869 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
TWI59G0130 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
VMungo0331G0636 Vigna mungo HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
GSVIVG01010607001 Vitis vinifera HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
GSVIVG01027086001 Vitis vinifera HOM05D001318 ORTHO05D001152 6.3e-06 53.9 35 71.4
EL10Ac1g00287 Beta vulgaris HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
CSS0025773 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
CSS0039754 Camellia sinensis var. sinensis HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
CAN.G1207.5 Capsicum annuum HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
CDE10G0647 Ceratophyllum demersum HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
AUR62004477 Chenopodium quinoa HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
DCAR_006971 Daucus carota HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
DCAR_008662 Daucus carota HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
ECA246G1590 Erigeron canadensis HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Migut.B01856 Erythranthe guttata HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Gohir.A08G034100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Gohir.D08G044600 Gossypium hirsutum HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Gorai.004G043600 Gossypium raimondii HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
HanXRQChr05g0159941 Helianthus annuus HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
HanXRQChr11g0334041 Helianthus annuus HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Lsat_1_v5_gn_5_159601 Lactuca sativa HOM05D001318 ORTHO05D001152 8.2e-06 53.5 52 57.7
Lsat_1_v5_gn_5_1601 Lactuca sativa HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Lj1g0016793 Lotus japonicus HOM05D001318 ORTHO05D001152 8.2e-06 53.5 52 57.7
Oeu004944.2 Olea europaea HOM05D001318 ORTHO05D001152 8.2e-06 53.5 54 53.7
Oeu007902.1 Olea europaea HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
QL04p058035 Quercus lobata HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
SalBow3G0525 Salvia bowleyana HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Hund16705 Selenicereus undatus HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Hund27205 Selenicereus undatus HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4
Sc01g0002770 Simmondsia chinensis HOM05D001318 ORTHO05D001152 8.2e-06 53.5 35 71.4


User provided reference genes

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