Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 2107.0 1096 100.0
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1439.5 1107 69.6
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1431.0 1118 68.9
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1424.1 1113 67.9
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1420.2 1105 68.7
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1416.7 1118 67.7
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1412.5 1117 67.8
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1406.7 1114 67.1
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1406.3 1122 67.6
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1403.3 1106 68.0
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1399.8 1141 66.3
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1398.6 1114 66.8
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1395.2 1105 67.3
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1395.2 1111 67.8
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1395.2 1112 67.7
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1394.4 1122 67.0
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1390.6 1118 67.4
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1389.0 1087 68.5
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1388.6 1111 67.3
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1388.6 1111 67.4
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1388.2 1118 67.3
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1388.2 1119 66.6
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1386.7 1074 68.7
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1383.6 1086 68.3
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1377.1 1121 65.9
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1374.4 1112 66.7
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 1373.6 1140 65.3
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1372.8 1119 66.2
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1369.4 1113 66.2
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1367.8 1055 68.7
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1357.4 1116 65.7
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1355.9 1108 66.0
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1354.0 1116 65.5
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1352.8 1108 66.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1351.3 1110 65.9
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1350.1 1102 65.7
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1348.6 1119 64.7
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1347.4 1123 64.6
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1347.4 1109 65.8
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1346.6 1112 65.6
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1345.9 1110 64.4
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1342.0 1111 64.7
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1341.3 1092 65.8
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1340.5 1076 66.6
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1339.7 1092 66.0
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1338.9 1085 65.8
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1338.9 1085 65.8
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1338.9 1112 64.4
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1337.8 1101 66.3
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1337.0 1098 65.0
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1335.5 1069 66.1
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1335.5 1076 66.5
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1335.1 1072 66.2
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1334.3 1075 66.1
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1333.9 1098 65.1
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1333.9 1076 66.4
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1333.9 1076 66.4
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1331.6 1085 65.5
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1331.6 1111 64.1
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1331.6 1113 64.4
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1330.9 1110 65.1
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1330.9 1113 64.2
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1330.5 1109 65.0
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1329.7 1076 66.5
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1329.3 1073 66.2
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1328.2 1076 66.1
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1327.4 1119 64.3
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1325.5 1075 65.2
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1325.1 1097 65.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1324.3 1115 65.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1323.5 1116 64.4
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1322.0 1098 65.0
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1321.6 1107 64.8
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1321.2 1109 64.5
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1321.2 1077 65.8
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1320.1 1079 65.4
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1318.1 1100 64.7
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1313.1 1038 67.8
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1308.5 1074 65.1
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1300.0 1109 62.8
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1297.0 1147 62.3
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1296.6 1053 65.3
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1286.2 1089 64.5
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1282.7 1076 64.1
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1282.7 1071 64.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1280.4 1125 62.8
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1277.3 1118 62.7
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 1272.7 1248 57.9
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1270.8 1115 63.8
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1265.8 1104 62.7
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1261.5 1111 61.6
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1253.4 1046 64.1
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1250.7 1126 60.4
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1246.5 1121 62.3
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1243.8 1124 60.8
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1241.1 1075 63.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1233.0 1115 61.5
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1209.9 1097 59.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1201.4 1104 58.2
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1156.4 1132 55.5
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1139.0 1059 61.1
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 2.7e-304 1048.9 829 67.2
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 1.2e-296 1023.5 1111 53.2
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 6.1e-264 914.8 1053 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 7.5e-254 881.3 1121 45.5
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 9.2e-252 874.4 757 62.4
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 8.3e-245 851.3 1039 45.6
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.4e-244 850.5 1053 45.7
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.3e-229 800.8 1054 43.2
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.5e-214 750.7 1110 41.0
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 1.7e-213 747.3 803 54.5
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.2e-144 517.7 1002 32.2
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-138 498.0 647 46.8
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 1.5e-137 495.0 1087 32.4
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 2.5e-132 477.6 538 52.8
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 9.3e-103 379.4 347 61.4
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 6.2e-99 366.7 342 59.6
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.0e-80 306.2 1055 26.0
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.7e-67 262.3 917 26.1
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 5.9e-57 227.3 244 53.7
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 5.9e-57 227.3 244 53.7
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.3e-51 209.5 1101 24.2
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 2.4e-50 205.3 246 50.8
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.1e-46 190.7 172 61.6
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-45 189.1 166 62.7
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 1.3e-40 172.9 183 53.0
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.5e-36 157.1 147 59.2
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.9e-35 155.2 157 54.8
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 1.5e-31 142.9 121 62.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.9e-27 128.6 85 76.5
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.0e-24 118.6 105 61.9
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 5.0e-24 117.9 103 64.1
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.2e-20 106.7 132 48.5
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-20 105.9 71 74.6
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 5.8e-20 104.4 76 67.1
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 3.2e-18 98.6 77 66.2
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 3.2e-18 98.6 77 66.2
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 4.1e-18 98.2 61 78.7
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 2.7e-17 95.5 57 84.2
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.6e-16 90.5 69 66.7
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-15 90.1 65 70.8
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 4.4e-12 78.2 61 65.6
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 2.7e-09 68.9 84 50.0
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.7e-08 66.2 46 69.6


User provided reference genes

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