Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 3.2e-170 601.7 306 100.0
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-121 439.9 260 88.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.6e-116 423.3 304 70.7
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.5e-116 422.2 304 71.4
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 4.6e-116 421.8 314 68.8
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.8e-116 421.0 314 67.5
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-115 420.6 301 74.4
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.9e-115 418.7 283 74.2
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 6.6e-115 417.9 283 73.9
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 6.6e-115 417.9 284 72.2
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 8.6e-115 417.5 316 68.7
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.5e-114 416.8 283 73.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 3.3e-114 415.6 283 73.1
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 9.5e-114 414.1 283 73.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-113 413.7 286 73.4
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.6e-113 413.3 286 73.4
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.6e-113 413.3 286 73.4
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.8e-113 412.5 281 73.7
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.8e-113 412.5 281 73.7
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.8e-113 412.5 281 73.7
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 3.6e-113 412.1 283 73.1
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 3.6e-113 412.1 283 73.1
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 3.6e-113 412.1 283 73.1
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 4.7e-113 411.8 283 73.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 4.7e-113 411.8 283 71.7
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 8.0e-113 411.0 281 73.3
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.1e-112 409.1 281 72.6
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 4.0e-112 408.7 286 71.7
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 5.2e-112 408.3 283 72.4
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 5.2e-112 408.3 285 71.6
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.2e-111 407.1 286 72.4
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 2.6e-111 406.0 281 72.2
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.4e-111 405.6 290 70.3
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 4.4e-111 405.2 286 72.4
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 7.5e-111 404.4 286 72.4
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.3e-110 403.7 286 71.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.3e-110 403.7 290 70.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.2e-110 402.9 282 71.6
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.2e-110 402.9 291 68.7
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.7e-110 402.1 282 71.6
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 8.3e-110 401.0 275 73.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.4e-109 400.2 285 71.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.1e-109 398.7 285 70.9
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.4e-109 398.3 286 69.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 2.1e-108 396.4 292 68.2
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.7e-108 396.0 283 69.3
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.0e-107 394.0 283 68.9
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.3e-107 393.7 285 70.2
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.3e-107 393.7 287 69.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.7e-107 393.3 285 68.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.7e-107 393.3 285 68.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.3e-107 392.9 291 68.4
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.0e-107 392.5 294 66.3
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 5.1e-107 391.7 287 70.0
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 5.1e-107 391.7 296 68.6
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 6.6e-107 391.3 283 69.3
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.6e-107 391.0 290 66.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.9e-106 389.8 280 68.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.5e-106 389.4 292 67.5
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.5e-106 389.4 285 69.8
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.3e-106 389.0 287 69.7
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.3e-106 389.0 285 69.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 3.3e-106 389.0 287 69.7
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.3e-106 389.0 287 69.3
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 7.3e-106 387.9 285 69.5
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-105 387.1 287 69.3
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-105 387.1 283 68.6
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.6e-105 386.7 283 68.6
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.1e-105 386.3 289 67.1
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.1e-105 386.3 289 67.1
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.8e-105 386.0 283 68.9
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 3.6e-105 385.6 283 68.2
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 4.7e-105 385.2 287 68.6
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 4.7e-105 385.2 291 66.3
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 4.7e-105 385.2 289 67.1
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.1e-105 384.4 283 68.2
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 8.1e-105 384.4 289 67.1
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.4e-104 383.6 292 66.4
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.4e-104 383.6 287 68.3
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.3e-104 382.9 292 66.8
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 4.0e-104 382.1 286 68.2
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.0e-104 382.1 287 67.6
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.0e-104 382.1 284 69.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.2e-104 381.7 283 67.8
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 6.8e-104 381.3 290 64.8
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-103 380.2 283 72.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.6e-103 379.4 291 66.3
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 5.8e-103 378.3 289 66.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 7.5e-103 377.9 286 66.1
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.5e-103 377.9 292 64.7
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 7.5e-103 377.9 290 65.5
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 9.9e-103 377.5 282 68.8
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 9.9e-103 377.5 283 66.8
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 9.9e-103 377.5 290 65.5
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-102 377.1 285 65.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.7e-102 375.6 286 66.4
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 4.9e-102 375.2 287 68.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.4e-102 374.8 286 65.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.4e-101 372.9 292 64.4
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.4e-101 372.9 278 72.3
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.2e-100 370.5 290 66.2
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.7e-100 369.4 287 65.9
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 6.0e-100 368.2 282 66.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 6.0e-100 368.2 287 66.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 7.8e-100 367.9 289 64.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.3e-99 367.1 287 66.9
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.7e-99 366.7 287 65.2
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.3e-99 366.3 288 66.3
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 3.0e-99 365.9 286 64.7
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 3.0e-99 365.9 286 64.7
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.9e-99 365.5 282 65.6
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.1e-98 364.0 285 65.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.5e-98 362.8 289 65.1
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 7.3e-98 361.3 271 68.3
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-97 360.5 282 66.3
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.2e-97 360.5 284 64.8
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.7e-97 358.6 285 65.6
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.1e-96 357.5 290 63.4
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.4e-96 356.3 282 64.5
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.1e-96 355.9 285 64.6
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.6e-95 352.8 286 65.0
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 5.8e-95 351.7 297 62.3
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.3e-94 350.5 273 64.5
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.2e-94 349.7 283 65.7
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.2e-94 349.7 291 63.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.4e-94 347.8 293 61.1
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 7.1e-93 344.7 282 62.1
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.0e-91 340.9 291 61.5
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.0e-91 340.9 288 62.5
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.0e-91 340.9 288 64.2
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.2e-89 334.0 287 60.3
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.1e-89 331.3 285 62.8
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.9e-88 328.2 310 56.8
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 3.4e-87 325.9 270 69.3
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.4e-87 325.9 286 60.1
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.4e-86 321.2 286 59.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 3.2e-85 319.3 297 56.6
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.3e-83 313.9 290 57.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.3e-83 313.9 290 56.9
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 5.1e-83 312.0 290 56.6
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 5.1e-83 312.0 286 59.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.5e-82 310.5 296 56.4
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.9e-82 310.1 296 56.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 5.6e-82 308.5 308 52.6
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 9.6e-82 307.8 291 57.0
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 2.0e-79 300.1 288 55.9
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 4.5e-79 298.9 282 57.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.2e-77 292.4 240 62.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 7.4e-74 281.6 207 71.0
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 4.5e-63 245.7 187 68.4
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.6e-57 227.3 277 45.1
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 6.1e-52 208.8 143 71.3
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.5e-50 204.1 279 44.4
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 3.2e-45 186.4 160 61.2
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.4e-43 181.0 149 62.4
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 3.7e-41 172.9 126 65.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.8e-35 154.1 137 59.9
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.6e-23 114.4 102 57.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 2.2e-22 110.5 335 28.1
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 2.2e-22 110.5 86 65.1
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.5e-21 107.8 107 52.3
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-21 107.5 75 72.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-21 105.9 107 51.4
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 4.9e-17 92.8 67 71.6
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 6.3e-17 92.4 93 52.7
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 5.9e-07 59.3 166 31.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.0e-06 58.5 89 42.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.3e-06 57.4 67 43.3


User provided reference genes

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