Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 7.4e-161 570.5 285 100.0
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.0e-90 335.5 263 72.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 9.9e-89 330.9 270 69.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-80 303.1 260 66.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 4.4e-73 278.9 266 58.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.9e-72 276.2 267 57.3
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 4.9e-72 275.4 267 57.3
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.4e-72 275.0 267 57.7
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.9e-71 273.5 267 56.9
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 5.4e-71 271.9 266 57.5
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.4e-71 271.9 267 56.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.4e-71 271.9 267 56.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.4e-71 271.9 267 56.9
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.2e-70 270.8 265 57.0
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.1e-70 270.0 265 56.6
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 3.5e-70 269.2 265 56.6
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 3.5e-70 269.2 265 56.6
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.0e-69 267.7 265 56.2
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.3e-69 267.3 267 56.6
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.7e-69 266.9 265 56.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 3.9e-69 265.8 263 56.3
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-68 263.8 266 55.3
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 2.5e-68 263.1 266 55.3
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 4.3e-68 262.3 258 61.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-67 260.0 267 56.6
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-67 260.0 267 56.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.6e-67 259.2 267 56.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.8e-66 256.9 268 55.2
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.4e-66 256.5 267 55.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.9e-66 255.0 267 55.8
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.9e-66 255.0 267 55.8
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 9.0e-66 254.6 269 54.3
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.2e-65 254.2 267 54.7
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 2.0e-65 253.4 270 57.8
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.8e-65 251.9 274 52.6
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 7.6e-65 251.5 278 54.3
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.7e-64 250.4 274 53.3
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 2.2e-64 250.0 268 53.0
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 2.9e-64 249.6 279 53.0
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.8e-64 249.2 275 52.7
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 4.9e-64 248.8 267 54.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 6.4e-64 248.4 267 53.6
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 6.4e-64 248.4 270 53.0
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 6.4e-64 248.4 266 54.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 8.4e-64 248.1 269 53.5
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 8.4e-64 248.1 266 52.6
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.4e-63 247.3 269 53.2
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.4e-63 247.3 269 53.2
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 7.1e-63 245.0 267 53.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 9.3e-63 244.6 271 52.4
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.3e-63 244.6 270 53.0
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.2e-62 244.2 268 53.7
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.2e-62 244.2 271 52.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.2e-62 244.2 273 51.3
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-62 243.4 275 52.7
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.5e-62 242.7 271 53.9
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.5e-62 242.7 268 53.4
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 3.5e-62 242.7 271 52.8
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 3.5e-62 242.7 265 51.7
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.5e-62 242.7 270 51.1
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.5e-62 242.7 270 51.1
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.6e-62 242.3 270 50.7
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 4.6e-62 242.3 267 52.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 6.0e-62 241.9 276 50.0
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 7.9e-62 241.5 268 53.4
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.3e-61 240.7 270 52.6
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.3e-61 240.7 268 52.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-61 240.7 267 50.9
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.8e-61 240.4 266 51.9
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.8e-61 240.4 268 52.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.3e-61 240.0 267 52.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 3.9e-61 239.2 267 52.8
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.1e-61 238.8 267 50.9
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.7e-61 238.4 268 51.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 8.7e-61 238.0 270 52.2
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 8.7e-61 238.0 270 51.9
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-60 237.7 275 51.6
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.5e-60 236.5 266 52.6
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.5e-60 236.5 267 52.1
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.3e-60 236.1 275 51.6
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.3e-60 236.1 274 50.4
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 4.3e-60 235.7 270 52.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 4.3e-60 235.7 272 52.6
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 5.6e-60 235.3 276 50.0
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 5.6e-60 235.3 273 50.2
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.6e-59 233.8 266 50.8
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.6e-59 233.8 265 50.9
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.6e-59 233.8 265 50.9
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 2.1e-59 233.4 273 50.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.1e-59 233.4 266 50.8
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.1e-59 233.4 272 51.1
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.7e-59 232.6 266 50.8
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.8e-59 232.3 263 51.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.8e-59 232.3 263 51.0
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.8e-59 232.3 266 50.4
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.2e-59 231.9 265 53.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 8.1e-59 231.5 266 50.4
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 8.1e-59 231.5 265 50.9
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-58 230.7 266 50.4
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.4e-58 230.7 265 50.9
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.4e-58 230.7 264 51.9
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.8e-58 230.3 263 50.6
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.8e-58 230.3 263 50.6
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.4e-58 229.9 280 48.9
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.1e-58 229.6 272 50.4
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 5.3e-58 228.8 268 50.0
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 5.3e-58 228.8 265 52.8
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 5.3e-58 228.8 268 51.9
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 6.9e-58 228.4 259 51.4
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.5e-57 227.3 263 49.4
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.0e-57 226.9 269 50.9
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.6e-57 226.5 269 48.3
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.5e-57 225.7 262 48.9
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 4.5e-57 225.7 262 48.9
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 9.9e-57 224.6 263 49.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.3e-56 224.2 271 49.8
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.2e-56 223.4 272 49.6
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.2e-56 223.4 264 49.2
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.1e-55 221.1 273 48.0
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.1e-55 221.1 265 49.8
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 5.5e-55 218.8 271 48.3
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.2e-54 217.6 269 48.7
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.3e-53 214.2 254 49.6
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.3e-53 213.4 273 48.7
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.3e-53 213.4 262 48.1
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 8.7e-53 211.5 268 48.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.1e-52 211.1 264 46.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 3.3e-52 209.5 272 46.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.3e-52 209.1 272 46.3
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 5.6e-52 208.8 263 48.3
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 8.2e-51 204.9 271 45.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.4e-50 204.1 273 46.2
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.6e-49 199.9 269 48.0
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 3.4e-49 199.5 177 59.3
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 5.8e-49 198.7 281 43.8
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 5.8e-49 198.7 269 43.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.2e-47 192.6 273 44.3
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.2e-47 192.6 279 44.1
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.6e-46 189.1 268 45.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.3e-45 187.6 284 40.5
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 1.9e-44 183.7 252 44.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.3e-43 181.0 271 42.8
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.6e-43 180.6 269 42.8
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 2.8e-43 179.9 142 64.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 2.0e-41 173.7 270 43.0
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 8.5e-40 168.3 268 41.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.5e-39 166.8 223 45.7
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.0e-37 161.4 268 38.8
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.9e-37 159.5 168 49.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 9.7e-36 154.8 263 39.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.2e-35 153.7 195 49.7
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-34 151.4 126 60.3
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 6.7e-29 132.1 116 58.6
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 9.7e-28 128.3 171 48.0
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.5e-25 120.9 166 45.8
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 9.7e-20 101.7 75 70.7
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.8e-13 80.9 128 34.4
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 2.6e-12 77.0 145 38.6
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 2.9e-08 63.5 53 58.5


User provided reference genes

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