Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 1.3e-282 975.7 485 100.0
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 5.2e-106 389.0 419 51.8
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.2e-99 367.9 415 48.9
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 2.1e-99 367.1 415 49.4
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 2.1e-99 367.1 419 48.9
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.3e-98 363.6 414 48.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 6.8e-98 362.1 417 48.4
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.4e-95 353.6 424 48.1
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 4.1e-95 352.8 424 47.6
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 4.6e-94 349.4 400 49.2
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 7.8e-94 348.6 471 44.6
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 7.8e-94 348.6 393 49.6
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.7e-93 347.4 394 48.5
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.3e-93 347.1 424 46.9
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 6.6e-93 345.5 393 48.3
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 6.6e-93 345.5 394 49.5
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 8.6e-93 345.1 424 46.9
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 8.6e-93 345.1 428 44.9
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.1e-92 344.7 461 44.0
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.5e-92 344.4 396 48.0
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.9e-92 344.0 396 49.0
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.5e-92 343.6 396 49.0
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 3.3e-92 343.2 393 48.6
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 4.3e-92 342.8 404 46.5
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.3e-92 342.0 439 44.6
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.3e-92 342.0 492 42.9
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 7.3e-92 342.0 462 43.9
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.5e-92 341.7 440 44.5
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.5e-92 341.7 439 44.9
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 9.5e-92 341.7 459 45.1
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 2.1e-91 340.5 414 46.9
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 2.1e-91 340.5 408 48.5
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 3.6e-91 339.7 413 46.5
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 4.7e-91 339.3 415 46.3
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 4.7e-91 339.3 431 46.2
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 6.2e-91 339.0 472 43.6
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 6.2e-91 339.0 413 47.7
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 8.0e-91 338.6 392 47.2
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 8.0e-91 338.6 410 46.8
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.4e-90 337.8 415 46.5
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.4e-90 337.8 394 47.0
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 3.1e-90 336.7 457 43.8
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 4.0e-90 336.3 413 46.2
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.5e-89 334.3 413 46.7
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.5e-89 334.3 458 43.7
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 2.0e-89 334.0 419 46.1
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.3e-88 331.3 441 44.7
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 3.7e-88 329.7 471 42.0
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 6.4e-88 328.9 473 41.9
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-87 328.2 428 43.7
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-87 327.4 471 41.6
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 5.4e-87 325.9 393 46.6
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.7e-86 323.6 393 47.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 2.7e-86 323.6 401 45.9
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.0e-85 321.6 392 46.7
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.3e-85 321.2 398 47.5
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 6.6e-85 318.9 393 45.0
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 6.6e-85 318.9 392 46.4
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.6e-83 313.2 393 43.3
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.6e-83 313.2 407 44.2
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 4.7e-83 312.8 391 44.0
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.1e-82 311.6 393 43.3
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.4e-82 311.2 384 45.3
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.3e-82 310.5 412 46.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 5.2e-82 309.3 393 44.8
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 5.2e-82 309.3 389 46.0
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.5e-81 307.8 396 44.2
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.1e-79 301.6 349 47.6
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 9.2e-79 298.5 439 40.8
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 1.6e-78 297.7 414 41.1
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 4.6e-78 296.2 373 44.8
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.0e-78 295.8 431 42.2
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.0e-77 295.0 388 44.8
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.0e-77 295.0 431 42.2
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.7e-77 294.3 419 41.3
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 3.0e-77 293.5 393 42.2
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 3.9e-77 293.1 459 39.7
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 8.6e-77 292.0 400 42.8
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-76 291.6 432 42.4
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 1.5e-76 291.2 419 41.1
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 1.5e-76 291.2 419 41.1
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.5e-76 291.2 389 42.9
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 7.3e-76 288.9 403 41.9
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 9.5e-76 288.5 396 42.4
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.2e-75 288.1 401 42.9
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.6e-75 287.7 470 38.5
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.4e-74 283.9 408 41.9
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 1.5e-73 281.2 389 42.7
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 2.0e-73 280.8 394 40.9
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 2.0e-73 280.8 394 40.9
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 7.6e-73 278.9 394 41.1
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 9.9e-73 278.5 306 52.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 9.9e-73 278.5 409 41.8
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.7e-72 277.7 474 39.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 9.2e-71 271.9 390 40.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 6.0e-70 269.2 469 37.3
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.1e-68 265.0 416 39.9
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.2e-67 261.5 366 41.3
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.6e-67 261.2 347 42.9
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 1.6e-67 261.2 462 37.7
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.4e-66 257.3 384 39.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 9.0e-66 255.4 362 41.7
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 9.0e-66 255.4 467 36.6
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.5e-65 254.6 286 50.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 4.4e-65 253.1 231 58.0
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 5.8e-65 252.7 415 38.6
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 3.9e-61 240.0 391 39.9
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 5.1e-61 239.6 416 37.3
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.9e-60 237.7 338 39.3
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 7.3e-60 235.7 388 37.9
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.6e-59 234.6 456 36.0
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 8.1e-59 232.3 322 41.3
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.3e-56 224.9 452 33.6
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 9.3e-55 218.8 415 36.9
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.6e-54 218.0 467 31.9
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.1e-52 211.8 444 31.8
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 4.3e-52 209.9 386 32.9
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.8e-50 204.5 421 35.2
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 2.1e-46 191.0 398 33.2
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 7.9e-46 189.1 464 31.0
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 6.2e-43 179.5 288 38.2
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 4.0e-42 176.8 327 34.3
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.8e-40 170.2 143 58.7
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 2.2e-35 154.5 192 40.6
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 2.4e-26 124.4 171 45.6
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 4.5e-25 120.2 187 38.5
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.0e-24 119.0 145 40.7
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.0e-24 119.0 99 62.6
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.7e-22 110.2 255 29.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 7.4e-20 102.8 270 27.8
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 5.0e-16 90.1 87 46.0
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.5e-15 86.7 71 59.2
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.3e-13 81.3 70 55.7
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 2.6e-12 77.8 73 56.2
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 6.5e-08 63.2 61 52.5


User provided reference genes

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