Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.3e-202 709.5 353 100.0
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.4e-52 211.1 294 43.9
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.8e-48 196.8 304 41.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.1e-48 195.7 302 40.4
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.0e-47 194.9 302 41.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.0e-47 194.9 299 41.1
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.3e-47 193.7 298 40.6
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.3e-47 193.7 304 41.4
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.0e-47 193.4 303 40.6
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 3.0e-47 193.4 303 42.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.0e-47 193.0 293 41.3
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.8e-47 192.2 307 43.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.5e-46 191.0 286 42.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.0e-46 190.7 308 41.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.6e-46 190.3 308 39.3
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.6e-46 190.3 297 43.1
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.6e-46 190.3 306 40.8
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.4e-46 189.9 298 40.3
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.7e-46 189.1 290 43.1
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.7e-46 189.1 303 42.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.5e-46 188.7 298 41.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 7.5e-46 188.7 300 41.3
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.5e-46 188.7 298 43.0
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 9.8e-46 188.3 264 43.2
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.3e-45 188.0 294 39.5
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.7e-45 187.6 299 41.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 3.7e-45 186.4 294 41.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 6.3e-45 185.7 298 41.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 6.3e-45 185.7 298 41.9
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 6.3e-45 185.7 299 41.5
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 8.3e-45 185.3 305 40.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.1e-44 184.9 290 41.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.1e-44 184.9 291 43.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.4e-44 184.5 310 39.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.4e-44 184.5 291 43.3
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-44 184.5 295 41.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.8e-44 184.1 306 42.8
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 4.1e-44 183.0 308 39.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 4.1e-44 183.0 297 40.7
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.0e-43 180.6 292 40.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.7e-43 180.3 308 41.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.5e-43 179.9 296 40.9
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 7.8e-43 178.7 295 40.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 7.8e-43 178.7 290 42.8
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.0e-42 178.3 229 44.5
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.3e-42 177.9 292 41.8
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.8e-42 176.4 293 41.0
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.8e-42 176.4 304 38.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.8e-42 176.4 217 47.0
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 5.0e-42 176.0 295 42.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 6.6e-42 175.6 301 40.2
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 6.6e-42 175.6 294 41.2
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.5e-41 174.5 300 40.7
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.5e-41 174.5 288 41.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.5e-41 174.5 299 41.1
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.9e-41 174.1 288 41.7
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.9e-41 174.1 296 38.9
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-41 173.7 291 39.9
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.3e-41 173.3 289 39.8
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.3e-41 172.9 287 40.4
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.3e-41 172.9 307 38.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.6e-41 172.6 289 40.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.3e-41 172.2 298 38.9
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 9.5e-41 171.8 232 44.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.5e-41 171.8 296 40.5
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 9.5e-41 171.8 309 38.5
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 9.5e-41 171.8 296 39.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.2e-40 171.4 298 39.9
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.6e-40 171.0 293 40.3
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.6e-40 171.0 296 39.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.8e-40 170.2 218 45.4
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-39 168.3 297 38.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.0e-39 168.3 243 44.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.8e-39 167.5 250 42.0
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.8e-39 167.5 247 42.5
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.2e-39 166.0 297 37.4
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 6.8e-39 165.6 298 38.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 6.8e-39 165.6 299 37.8
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 8.9e-39 165.2 289 37.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.2e-38 164.9 250 42.4
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.5e-38 164.5 300 39.0
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.6e-38 163.7 251 40.6
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 3.4e-38 163.3 297 38.0
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.4e-38 162.9 291 39.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 5.7e-38 162.5 238 42.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 7.5e-38 162.2 228 43.9
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 7.5e-38 162.2 255 43.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 7.5e-38 162.2 286 39.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 9.8e-38 161.8 289 40.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.7e-37 161.0 229 43.2
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.2e-37 160.6 238 43.3
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.7e-37 159.8 300 36.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 4.9e-37 159.5 297 40.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.9e-37 159.5 229 43.7
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 8.3e-37 158.7 235 44.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.8e-36 157.5 242 43.8
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-36 157.5 242 43.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.8e-36 157.5 235 44.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.4e-36 157.1 241 43.2
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.2e-36 156.8 222 43.7
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 9.2e-36 155.2 295 39.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.2e-35 154.8 222 44.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.2e-35 154.8 218 43.6
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.6e-35 154.5 233 42.1
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.0e-35 154.1 304 38.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.5e-35 153.3 298 37.6
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 4.6e-35 152.9 247 42.1
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.0e-35 152.5 278 38.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 7.8e-35 152.1 233 42.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-34 151.8 298 36.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-32 144.4 293 36.9
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.4e-31 141.4 314 36.9
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 3.1e-31 140.2 215 38.1
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.3e-29 132.1 310 32.6
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-27 126.7 150 48.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 7.8e-27 125.6 189 40.7
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.1e-25 121.7 187 41.2
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.8e-22 109.4 290 29.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.7e-21 106.7 326 30.7
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.9e-21 106.3 216 37.5
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.9e-21 106.3 212 38.7
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.9e-21 106.3 212 38.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 6.4e-21 105.9 213 36.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.9e-18 96.7 266 30.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-15 88.6 231 33.8
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 7.6e-14 82.4 106 43.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.9e-13 80.5 152 38.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-12 78.2 289 29.1
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.1e-12 75.9 331 24.2
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.2e-11 75.1 104 47.1
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.7e-11 73.9 130 38.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.0e-11 72.8 178 33.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 9.6e-09 65.5 220 28.2
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.6e-08 63.5 89 41.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 9.0e-07 58.9 134 35.1


User provided reference genes

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