Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 8.3e-202 706.8 360 100.0
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 6.8e-103 378.3 283 72.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 9.2e-100 367.9 262 76.7
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 2.0e-94 350.1 251 76.5
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 5.8e-86 322.0 266 68.4
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-78 297.4 279 57.3
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-78 297.4 279 58.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 2.6e-78 296.6 286 56.6
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 3.4e-78 296.2 279 58.1
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.4e-78 296.2 279 58.1
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.9e-77 293.1 279 57.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.9e-77 292.4 288 56.2
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 4.9e-77 292.4 280 56.1
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.4e-77 292.0 286 56.6
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 8.4e-77 291.6 283 56.2
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.4e-77 291.6 277 57.8
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 8.4e-77 291.6 277 57.8
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 8.4e-77 291.6 280 56.4
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 8.4e-77 291.6 279 57.0
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.9e-76 290.4 277 57.4
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.4e-76 290.0 277 57.4
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.4e-76 290.0 279 56.6
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.4e-76 290.0 279 56.6
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.4e-76 290.0 279 56.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.2e-76 289.7 281 55.9
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 3.2e-76 289.7 278 56.5
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.4e-76 288.9 281 56.6
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.1e-76 288.5 281 56.2
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 9.3e-76 288.1 279 56.6
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 9.3e-76 288.1 277 56.7
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 9.3e-76 288.1 271 57.9
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 9.3e-76 288.1 292 54.1
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.6e-75 287.3 278 56.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-75 287.0 280 57.1
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-75 287.0 280 57.1
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-75 287.0 280 57.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-75 287.0 280 57.1
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 2.7e-75 286.6 294 54.1
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.7e-75 286.6 279 55.9
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 2.7e-75 286.6 279 55.9
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.7e-75 286.6 291 54.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 3.5e-75 286.2 292 53.8
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 7.8e-75 285.0 277 56.3
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.8e-75 285.0 287 55.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.0e-74 284.6 279 55.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.7e-74 283.9 294 53.7
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.7e-74 283.9 294 53.4
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.7e-74 283.9 279 55.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.7e-74 283.9 280 56.8
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 1.7e-74 283.9 281 55.5
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.7e-74 283.9 280 55.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.0e-74 283.1 280 56.8
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.1e-74 282.3 282 55.0
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-73 280.8 283 54.8
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.5e-73 280.8 280 55.0
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.5e-73 280.8 280 56.1
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.9e-73 280.4 281 55.2
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.5e-73 280.0 294 52.7
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.3e-73 279.3 282 55.3
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 5.6e-73 278.9 285 54.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.1e-72 276.9 281 54.8
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.8e-72 276.6 278 53.6
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.8e-72 276.6 277 53.1
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 6.2e-72 275.4 278 56.1
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.4e-71 274.2 292 53.4
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.4e-71 274.2 278 52.2
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.4e-71 274.2 278 52.2
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.8e-71 273.9 280 54.3
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.8e-71 273.9 274 53.3
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 2.4e-71 273.5 280 53.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 3.1e-71 273.1 281 52.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.1e-71 273.1 280 52.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.0e-71 272.7 281 54.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.3e-71 272.3 280 53.9
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.3e-71 272.3 278 52.5
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 6.9e-71 271.9 278 52.5
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 9.0e-71 271.6 285 53.0
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 9.0e-71 271.6 280 53.9
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 9.0e-71 271.6 281 53.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.5e-70 270.8 282 52.8
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.5e-70 270.8 284 52.5
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.5e-70 270.8 284 51.1
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.0e-70 270.4 278 52.5
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 2.6e-70 270.0 281 53.4
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 4.4e-70 269.2 267 55.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 4.4e-70 269.2 280 53.2
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 7.6e-70 268.5 280 53.6
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.6e-70 268.5 283 54.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.3e-69 267.7 282 51.8
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 1.7e-69 267.3 286 52.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.2e-69 266.9 279 52.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 2.2e-69 266.9 278 53.2
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.9e-69 266.5 283 51.9
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.9e-69 266.5 283 51.9
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 3.8e-69 266.2 279 52.3
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 3.8e-69 266.2 279 52.3
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.8e-69 266.2 271 52.0
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 4.9e-69 265.8 279 51.6
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 4.9e-69 265.8 279 52.3
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 6.4e-69 265.4 286 52.1
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.1e-68 264.6 281 53.7
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.1e-68 264.6 279 52.0
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-68 264.2 279 52.7
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.4e-68 264.2 279 52.3
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 2.4e-68 263.5 283 51.2
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.4e-68 263.5 279 52.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.2e-68 263.1 284 52.5
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.2e-68 262.7 279 52.3
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.2e-68 262.7 280 51.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 4.2e-68 262.7 280 51.4
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.4e-68 262.3 279 52.3
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 7.1e-68 261.9 283 51.6
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.2e-67 261.2 279 52.0
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.2e-67 261.2 281 51.6
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.6e-67 260.8 285 51.6
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.7e-67 260.0 279 52.0
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.6e-67 259.2 281 52.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 6.0e-67 258.8 283 51.9
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 5.1e-66 255.8 283 51.2
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 5.6e-65 252.3 284 49.3
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 9.6e-65 251.5 285 50.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.3e-64 251.1 277 49.1
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.1e-64 250.4 280 51.1
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.8e-64 250.0 267 53.6
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.6e-64 249.6 271 53.1
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.1e-63 248.1 285 49.1
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.1e-63 248.1 278 50.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.4e-63 246.9 286 48.3
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 2.4e-63 246.9 270 57.8
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.4e-63 246.9 284 50.0
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.5e-62 244.2 278 48.6
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 3.4e-62 243.0 284 50.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.2e-61 240.4 283 49.8
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.2e-61 240.4 268 49.6
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 4.9e-61 239.2 284 48.6
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 6.4e-61 238.8 283 49.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 6.4e-61 238.8 256 52.7
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.9e-60 237.3 323 43.0
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.5e-60 235.7 282 50.4
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 6.0e-59 232.3 267 47.2
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.1e-57 228.0 282 46.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.5e-57 226.9 282 47.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 5.6e-57 225.7 282 48.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 6.9e-55 218.8 266 47.0
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 6.9e-55 218.8 286 46.5
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-54 218.0 252 50.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 7.9e-51 205.3 236 48.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.8e-50 204.1 255 49.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.2e-45 187.2 203 52.7
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.0e-42 176.8 162 57.4
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.7e-40 169.9 274 38.7
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-37 161.8 154 53.2
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 4.1e-31 139.8 142 55.6
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.3e-29 134.8 258 34.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.3e-29 134.8 133 53.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 2.2e-24 117.5 75 80.0
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.2e-24 117.5 149 45.0
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.3e-21 108.2 126 48.4
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 7.5e-17 92.4 84 56.0
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 3.1e-15 87.0 66 68.2
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.0e-13 82.0 94 46.8
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-11 75.1 98 41.8
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 2.7e-11 73.9 98 40.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 4.8e-08 63.2 345 23.8
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 4.1e-07 60.1 87 40.2


User provided reference genes

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