Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 1.7e-128 462.6 218 100.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 5.4e-63 245.0 302 50.7
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 7.4e-52 208.0 160 65.0
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 3.7e-51 205.7 234 52.1
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 3.1e-50 202.6 121 81.8
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.5e-49 200.3 174 64.4
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 1.4e-47 193.7 120 79.2
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 2.1e-46 189.9 226 50.9
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 2.1e-46 189.9 226 50.9
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 2.1e-46 189.9 226 50.9
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 2.1e-46 189.9 226 50.9
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 1.8e-37 160.2 158 57.0
SHI26755 Sapria himalayana HOM05D001966 ORTHO05D010986 5.0e-32 142.1 157 51.0
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 2.5e-31 139.8 101 69.3
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-30 136.0 101 67.3
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 4.6e-30 135.6 222 42.3
Aqoxy38s012 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 3.0e-29 132.9 81 77.8
Aqoxy4G02030 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 3.0e-29 132.9 81 77.8
Cfa023005 Carpinus fangiana HOM05D001966 ORTHO05D010986 3.0e-29 132.9 81 77.8
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 3.0e-29 132.9 84 78.6
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-28 130.6 89 74.2
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 2.6e-28 129.8 83 78.3
CsaV3_UNG196500 Cucumis sativus L. HOM05D001966 ORTHO05D010986 3.3e-28 129.4 81 76.5
Sed0007694 Sechium edule HOM05D001966 ORTHO05D010986 3.3e-28 129.4 81 76.5
Sed0023467 Sechium edule HOM05D001966 ORTHO05D010986 3.3e-28 129.4 81 76.5
Sed0025793 Sechium edule HOM05D001966 ORTHO05D010986 3.3e-28 129.4 81 76.5
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 5.7e-28 128.6 251 37.8
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 9.7e-28 127.9 118 61.0
CAN.G593.3 Capsicum annuum HOM05D001966 ORTHO05D004271 1.3e-27 127.5 133 56.4
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 1.3e-27 127.5 139 55.4
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 2.8e-27 126.3 79 78.5
Cpa.g.sc23.86 Carica papaya HOM05D001966 ORTHO05D010986 8.2e-27 124.8 76 77.6
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.2e-27 124.8 84 70.2
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.1e-26 124.4 80 77.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 1.1e-26 124.4 80 77.5
Sed0001789 Sechium edule HOM05D001966 ORTHO05D010986 1.8e-26 123.6 77 77.9
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 2.0e-25 120.2 77 74.0
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 2.6e-25 119.8 79 75.9
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 3.4e-25 119.4 73 82.2
SalBow1G8704 Salvia bowleyana HOM05D001966 ORTHO05D007227 4.5e-25 119.0 68 85.3
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 5.9e-25 118.6 95 67.4
unitig_91.g26520 Utricularia gibba HOM05D001966 ORTHO05D007227 1.3e-24 117.5 68 83.8
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 6.5e-24 115.2 107 56.1
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 1.4e-23 114.0 109 58.7
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 2.3e-21 106.7 161 46.6
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.0e-21 106.3 125 51.2
Atru.chr9.267 Acer truncatum HOM05D001966 ORTHO05D007227 1.1e-20 104.4 64 81.2
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 2.6e-20 103.2 54 92.6
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 2.2e-19 100.1 80 67.5
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 2.8e-19 99.8 70 71.4
CARHR282380 Cardamine hirsuta HOM05D001966 ORTHO05D010986 2.8e-19 99.8 70 71.4
CARHR282500 Cardamine hirsuta HOM05D001966 ORTHO05D010986 2.8e-19 99.8 70 71.4
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 8.2e-19 98.2 62 74.2
arahy.Tifrunner.gnm1.ann1.LY649L Arachis hypogaea HOM05D001966 ORTHO05D010986 1.4e-18 97.4 58 77.6
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 1.8e-18 97.1 84 61.9
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 7.0e-18 95.1 58 77.6
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 1.6e-17 94.0 81 60.5
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 5.9e-17 92.0 200 37.0
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 7.7e-17 91.7 75 65.3
ClCG09G021430 Citrullus lanatus HOM05D001966 ORTHO05D010986 1.0e-16 91.3 55 78.2
CSS0015594 Camellia sinensis var. sinensis HOM05D001966 ORTHO05D010986 5.0e-16 89.0 63 68.3
Peaxi162Scf00994g00002 Petunia axillaris HOM05D001966 ORTHO05D010986 8.5e-16 88.2 50 80.0
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.5e-15 87.4 52 76.9
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.5e-15 87.4 52 76.9
Nitab4.5_0003101g0110 Nicotiana tabacum HOM05D008354 ORTHO05D010055 5.5e-15 85.5 99 47.5
Peaxi162Scf01600g00007 Petunia axillaris HOM05D001966 ORTHO05D010986 1.2e-14 84.3 50 76.0
Nitab4.5_0001986g0110 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.8e-13 80.5 49 75.5
Nitab4.5_0004137g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.8e-13 80.5 71 57.7
SHI36395 Sapria himalayana HOM05D001966 ORTHO05D010986 3.0e-13 79.7 47 76.6
Oeu041412.1 Olea europaea HOM05D001966 ORTHO05D010986 1.2e-12 77.8 50 72.0
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 2.0e-12 77.0 40 87.5
Nitab4.5_0001761g0140 Nicotiana tabacum HOM05D001966 ORTHO05D010986 2.0e-12 77.0 50 72.0
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.0e-12 77.0 40 87.5
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 2.0e-12 77.0 40 87.5
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 2.0e-12 77.0 40 87.5
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 4.4e-12 75.9 67 55.2
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 4.4e-12 75.9 75 57.3
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.7e-12 75.5 40 82.5
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 9.7e-12 74.7 84 51.2
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 9.7e-12 74.7 40 85.0
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 1.3e-11 74.3 43 76.7
arahy.Tifrunner.gnm1.ann1.X4EL03 Arachis hypogaea HOM05D001966 ORTHO05D010986 2.8e-11 73.2 49 69.4
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 3.7e-11 72.8 40 80.0
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 1.1e-10 71.2 78 51.3
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 1.1e-10 71.2 44 75.0
COL.COLO4_00694 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.4e-10 70.9 37 89.2
COL.COLO4_02908 Corchorus olitorius HOM05D001966 ORTHO05D007227 1.4e-10 70.9 37 89.2
arahy.Tifrunner.gnm1.ann1.9FU6Q4 Arachis hypogaea HOM05D009726 ORTHO05D010588 1.8e-10 70.5 63 58.7
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.8e-10 70.5 144 38.2
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.4e-10 70.1 76 52.6
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 4.1e-10 69.3 40 80.0
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 5.3e-10 68.9 40 80.0
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 9.1e-10 68.2 38 81.6
arahy.Tifrunner.gnm1.ann1.WK7HZX Arachis hypogaea HOM05D009726 ORTHO05D010588 1.6e-09 67.4 61 57.4
HanXRQChr14g0462871 Helianthus annuus HOM05D005084 ORTHO05D006254 2.7e-09 66.6 37 86.5
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.5e-09 65.9 85 44.7
Nitab4.5_0006502g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 4.5e-09 65.9 55 61.8
arahy.Tifrunner.gnm1.ann1.CK4XFX Arachis hypogaea HOM05D009726 ORTHO05D010055 7.7e-09 65.1 32 90.6
arahy.Tifrunner.gnm1.ann1.WHCD0B Arachis hypogaea HOM05D001966 ORTHO05D007227 7.7e-09 65.1 72 51.4
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.3e-08 64.3 32 87.5
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 1.3e-08 64.3 32 87.5
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 1.3e-08 64.3 38 76.3
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.3e-08 64.3 37 81.1
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.3e-08 64.3 36 80.6
BraSC179t45782Z Brassica rapa HOM05D001966 ORTHO05D007227 1.7e-08 63.9 39 84.6
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.2e-08 63.5 32 84.4
Nitab4.5_0007400g0150 Nicotiana tabacum HOM05D001966 ORTHO05D010986 2.2e-08 63.5 55 60.0
Nitab4.5_0012234g0090 Nicotiana tabacum HOM05D001966 ORTHO05D010986 2.2e-08 63.5 43 69.8
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 2.2e-08 63.5 89 43.8
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 6.5e-08 62.0 51 60.8
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 1.1e-07 61.2 37 78.4
arahy.Tifrunner.gnm1.ann1.MCF6CI Arachis hypogaea HOM05D001966 ORTHO05D010986 1.9e-07 60.5 37 73.0
Nitab4.5_0003351g0090 Nicotiana tabacum HOM05D000325 ORTHO05D002025 1.9e-07 60.5 28 89.3
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 2.5e-07 60.1 29 89.7
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 3.2e-07 59.7 58 55.2
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 4.2e-07 59.3 37 78.4
Nitab4.5_0009355g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010986 5.5e-07 58.9 34 79.4
Psat7g093280 Pisum sativum HOM05D001966 ORTHO05D010986 5.5e-07 58.9 51 56.9
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 2.7e-06 56.6 40 67.5
Gohir.1Z049782 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.7e-06 56.6 29 89.7
Gohir.A04G039285 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.7e-06 56.6 29 89.7
Gohir.A05G323732 Gossypium hirsutum HOM05D001966 ORTHO05D007227 2.7e-06 56.6 29 89.7
Gohir.A13G086695 Gossypium hirsutum HOM05D001966 ORTHO05D007227 8.0e-06 55.1 29 86.2


User provided reference genes

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