Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 8.0e-49 196.8 103 100.0
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 6.0e-28 127.5 87 71.3
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.5e-26 120.2 81 70.4
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.8e-25 118.6 81 69.1
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.7e-25 117.9 81 69.1
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.2e-25 117.5 81 66.7
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.4e-24 116.3 81 69.1
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.4e-24 116.3 81 65.4
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.4e-24 116.3 81 71.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.4e-24 116.3 81 69.1
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 2.4e-24 115.5 84 65.5
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 3.1e-24 115.2 81 69.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 3.1e-24 115.2 88 67.0
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.1e-24 115.2 81 65.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 3.1e-24 115.2 81 66.7
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.0e-24 114.8 81 65.4
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.2e-24 114.4 81 65.4
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.2e-24 114.4 81 65.4
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.2e-24 114.4 81 65.4
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.8e-24 114.0 81 69.1
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 6.8e-24 114.0 87 63.2
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 8.9e-24 113.6 80 67.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.2e-23 113.2 81 64.2
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.2e-23 113.2 86 65.1
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.2e-23 113.2 81 65.4
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.5e-23 112.8 81 67.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.5e-23 112.8 81 69.1
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.5e-23 112.8 80 65.0
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.5e-23 112.8 81 63.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.0e-23 112.5 81 65.4
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 2.0e-23 112.5 81 64.2
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.0e-23 112.5 81 64.2
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.0e-23 112.5 81 61.7
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.0e-23 112.5 88 63.6
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.6e-23 112.1 81 66.7
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 4.4e-23 111.3 81 63.0
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 4.4e-23 111.3 81 69.1
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.4e-23 111.3 89 60.7
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.4e-23 111.3 81 63.0
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 5.8e-23 110.9 81 61.7
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 5.8e-23 110.9 81 65.4
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 7.6e-23 110.5 81 64.2
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 9.9e-23 110.2 81 61.7
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 9.9e-23 110.2 81 65.4
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-22 109.8 81 64.2
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.7e-22 109.4 87 59.8
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.7e-22 109.4 81 61.7
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 2.2e-22 109.0 81 63.0
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.2e-22 109.0 81 61.7
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 2.9e-22 108.6 87 62.1
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.9e-22 108.6 80 65.0
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.9e-22 108.6 81 63.0
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.9e-22 108.6 89 58.4
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.9e-22 108.6 89 58.4
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.9e-22 108.6 89 58.4
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.8e-22 108.2 81 63.0
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.9e-22 107.8 81 64.2
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 4.9e-22 107.8 81 61.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 4.9e-22 107.8 81 66.7
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.4e-22 107.5 81 61.7
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 8.4e-22 107.1 81 61.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-21 106.7 89 58.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.4e-21 106.3 81 60.5
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.9e-21 105.9 81 60.5
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 1.9e-21 105.9 87 57.5
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.4e-21 105.5 81 63.0
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 2.4e-21 105.5 81 61.7
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.2e-21 105.1 77 63.6
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 4.2e-21 104.8 81 59.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 4.2e-21 104.8 79 60.8
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 7.1e-21 104.0 81 61.7
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 9.2e-21 103.6 87 57.5
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.2e-20 103.2 81 56.8
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.6e-20 102.8 91 58.2
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.6e-20 102.8 87 58.6
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.6e-20 102.8 81 61.7
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.1e-20 102.4 81 58.0
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.7e-20 102.1 80 66.2
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.7e-20 102.1 80 57.5
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 2.7e-20 102.1 81 58.0
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 3.5e-20 101.7 80 63.8
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.6e-20 101.3 81 59.3
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 6.0e-20 100.9 81 61.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.8e-20 100.5 80 57.5
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 7.8e-20 100.5 80 57.5
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.7e-19 99.4 81 58.0
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 6.6e-19 97.4 81 58.0
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 8.7e-19 97.1 87 55.2
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 8.7e-19 97.1 87 55.2
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.1e-18 96.7 82 56.1
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.9e-18 95.9 76 60.5
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.9e-18 95.9 65 72.3
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 7.3e-18 94.0 68 66.2
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 9.6e-18 93.6 82 53.7
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.6e-17 92.8 82 53.7
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 3.6e-17 91.7 82 52.4
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 4.8e-17 91.3 80 57.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 8.1e-17 90.5 67 59.7
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.1e-17 90.5 81 50.6
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 8.1e-17 90.5 81 54.3
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.8e-16 89.4 81 53.1
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.1e-16 88.6 82 48.8
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.1e-16 88.6 82 48.8
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 4.0e-16 88.2 61 68.9
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 4.0e-16 88.2 81 50.6
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 5.3e-16 87.8 82 47.6
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 5.3e-16 87.8 82 47.6
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 6.9e-16 87.4 82 47.6
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 6.9e-16 87.4 82 47.6
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 6.9e-16 87.4 88 45.5
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.5e-15 86.3 59 66.1
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.5e-15 86.3 82 47.6
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.5e-15 86.3 82 47.6
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.5e-15 86.3 82 47.6
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.5e-15 86.3 74 51.4
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 1.5e-15 86.3 60 71.7
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-15 85.5 82 47.6
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.6e-15 85.5 82 47.6
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 2.6e-15 85.5 82 47.6
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.6e-15 85.5 82 48.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 4.4e-15 84.7 82 47.6
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 5.8e-15 84.3 82 46.3
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 5.8e-15 84.3 82 46.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 7.6e-15 84.0 82 46.3
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 9.9e-15 83.6 82 46.3
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 1.3e-14 83.2 83 53.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.7e-14 82.8 82 46.3
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-14 82.8 82 46.3
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.7e-14 82.8 82 46.3
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.9e-14 82.0 63 60.3
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 3.8e-14 81.6 82 45.1
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.8e-14 81.6 72 52.8
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.1e-13 80.1 81 45.7
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.4e-13 79.7 81 42.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.9e-13 79.3 83 48.2
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.4e-13 79.0 84 46.4
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.0e-11 73.6 58 56.9
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 4.3e-10 68.2 78 41.0
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 7.3e-10 67.4 71 45.1
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 9.6e-10 67.0 89 41.6
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 9.6e-10 67.0 89 41.6
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.6e-09 66.2 71 43.7
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.1e-09 65.9 55 60.0
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 6.2e-09 64.3 63 47.6
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 5.3e-08 61.2 78 44.9
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.2e-07 60.1 83 41.0
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 2.0e-07 59.3 34 82.4
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.4e-07 58.5 72 44.4
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 5.8e-07 57.8 82 39.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.7e-06 56.2 82 36.6


User provided reference genes

Program Settings