Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-46 189.1 98 100.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 9.7e-20 100.1 107 57.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-19 99.8 73 69.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 8.2e-19 97.1 67 73.1
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 7.7e-17 90.5 121 50.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.5e-16 87.4 70 67.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-14 83.2 67 62.7
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 4.7e-14 81.3 67 62.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 4.7e-14 81.3 67 62.7
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 8.0e-14 80.5 67 62.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.0e-13 80.1 66 62.1
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.0e-13 80.1 67 61.2
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.4e-13 79.7 67 62.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.4e-13 79.7 67 61.2
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.4e-13 79.7 67 61.2
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.3e-13 79.0 67 61.2
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.3e-13 79.0 70 60.0
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.3e-13 79.0 70 60.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.0e-13 78.6 104 47.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.0e-13 78.2 70 60.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.0e-13 78.2 67 61.2
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 59.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 5.2e-13 77.8 67 61.2
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.8e-13 77.4 67 61.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.8e-13 77.4 67 61.2
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.8e-13 77.0 67 61.2
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.2e-12 76.6 69 60.9
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.2e-12 76.6 60 60.0
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-12 76.6 67 59.7
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.5e-12 76.3 67 59.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.5e-12 76.3 65 63.1
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.5e-12 76.3 67 59.7
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.0e-12 75.9 67 59.7
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 2.6e-12 75.5 67 58.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.4e-12 75.1 67 59.7
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.4e-12 74.7 67 59.7
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.4e-12 74.7 67 59.7
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.4e-12 74.7 67 59.7
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.4e-12 74.7 67 59.7
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.4e-12 74.7 67 59.7
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 5.7e-12 74.3 67 58.2
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.7e-12 74.3 85 52.9
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 7.5e-12 73.9 67 56.7
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.8e-12 73.6 53 66.0
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 9.8e-12 73.6 67 58.2
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.3e-11 73.2 58 60.3
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-11 72.8 67 58.2
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.7e-11 72.8 67 59.7
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.7e-11 71.6 67 58.2
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 4.8e-11 71.2 67 56.7
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-10 70.1 67 53.7
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.4e-10 67.8 91 47.3
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 7.0e-10 67.4 47 68.1
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 9.1e-10 67.0 96 49.0
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 7.7e-09 63.9 61 60.7
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-08 63.5 41 70.7
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.7e-08 62.8 38 73.7
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.6e-06 56.2 60 53.3
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.6e-06 56.2 33 75.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.7e-06 55.5 34 73.5
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.7e-06 55.5 34 73.5


User provided reference genes

Program Settings