Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.1e-205 717.2 355 100.0
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.2e-60 236.5 217 62.7
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 3.2e-60 236.5 244 57.8
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.1e-60 236.1 244 57.4
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.2e-60 235.0 242 57.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 3.9e-58 229.6 244 57.0
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.1
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 6.6e-58 228.8 244 56.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.6e-58 228.4 246 56.5
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.5e-57 226.9 241 57.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.1e-56 223.8 244 56.1
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-56 222.6 244 56.1
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-56 222.6 244 56.1
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-56 222.6 244 56.1
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 4.7e-56 222.6 244 56.1
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 6.1e-56 222.2 244 55.7
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.1e-55 219.9 244 55.7
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 3.1e-55 219.9 244 55.7
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.0e-55 219.5 244 55.7
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 5.2e-55 219.2 244 55.7
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-54 218.0 244 55.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-54 218.0 244 55.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-54 218.0 244 55.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 4.4e-54 216.1 216 58.3
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 5.8e-54 215.7 244 54.9
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 8.3e-53 211.8 244 54.5
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 3.5e-51 206.5 244 53.7
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.0e-50 204.9 247 51.0
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 1.0e-50 204.9 247 51.0
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.7e-50 204.1 244 53.3
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.6e-48 197.6 211 55.5
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 2.1e-48 197.2 348 43.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.2e-46 191.4 212 54.7
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 5.8e-46 189.1 172 61.6
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.3e-45 188.0 213 54.0
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 3.7e-45 186.4 212 53.8
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.2e-44 183.3 212 53.3
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.4e-44 182.6 244 50.4
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 9.2e-44 181.8 243 50.2
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.1e-42 176.0 214 50.5
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.3e-41 172.9 108 78.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 7.3e-41 172.2 190 57.9
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.6e-40 171.0 210 53.3
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.6e-40 171.0 214 52.3
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.1e-40 170.6 210 53.3
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.4e-39 167.9 211 54.0
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.1e-39 166.8 221 51.1
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 4.0e-39 166.4 244 47.5
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 8.9e-39 165.2 211 53.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.9e-39 165.2 211 53.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 8.9e-39 165.2 211 53.6
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 9.9e-38 161.8 99 80.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 9.9e-38 161.8 211 52.6
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.2e-37 160.6 112 72.3
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-37 160.2 187 56.7
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.7e-37 159.8 108 75.9
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.7e-37 159.8 108 75.9
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.7e-37 159.8 108 75.9
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 7.1e-36 155.6 88 84.1
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.1e-32 144.1 188 50.0
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 8.1e-32 142.1 187 49.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-31 141.4 83 80.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 2.6e-30 137.1 85 78.8
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 4.9e-29 132.9 89 75.3
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.2e-28 130.2 88 75.0
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.4e-28 129.4 205 43.9
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.2e-27 128.3 84 76.2
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 2.7e-27 127.1 97 66.0
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 4.3e-25 119.8 96 63.5
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 7.3e-25 119.0 108 67.6
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 8.1e-24 115.5 88 68.2
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.4e-23 114.8 110 62.7
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 3.1e-23 113.6 105 63.8
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-22 111.3 184 39.7
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 2.0e-22 110.9 97 68.0
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.4e-22 110.2 110 62.7
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 5.8e-22 109.4 115 56.5
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 5.8e-22 109.4 108 55.6
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 7.6e-22 109.0 78 73.1
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.3e-21 108.2 97 67.0
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 2.9e-21 107.1 89 61.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 5.4e-20 102.8 65 78.5
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 7.1e-20 102.4 88 69.3
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-19 100.5 86 67.4
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 8.7e-18 95.5 99 59.6
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-17 94.7 94 61.7
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.5e-17 94.0 80 67.5
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 4.3e-17 93.2 159 41.5
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.4e-15 88.2 132 40.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 6.9e-15 85.9 67 73.1
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 3.2e-12 77.0 53 69.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 7.1e-12 75.9 82 59.8
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 9.3e-12 75.5 95 54.7
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 9.3e-12 75.5 55 67.3
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-11 74.7 91 46.2
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.6e-11 74.7 68 67.6
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.9e-11 72.4 171 38.0
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 5.1e-10 69.7 245 24.9
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 1.1e-09 68.6 58 69.0
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 1.5e-09 68.2 80 57.5
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 4.8e-08 63.2 49 71.4
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-07 62.0 59 61.0
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.0e-07 60.1 118 36.4
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 4.0e-07 60.1 57 61.4
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.2e-06 58.5 56 67.9
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 3.4e-06 57.0 101 47.5


User provided reference genes

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