Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26635 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-40 169.5 83 100.0
SHI09569 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-12 74.3 62 59.7
AUR62035459 Chenopodium quinoa HOM05D000006 ORTHO05D000001 5.0e-09 64.3 63 49.2
ECA238G0426 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-09 64.3 78 46.2
ECA246G2006 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-09 64.3 78 46.2
ECA232G2478 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 63.5 78 46.2
ECA238G1149 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 63.5 78 46.2
ECA238G1515 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 63.5 78 46.2
ECA240G2946 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 63.5 78 46.2
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.5e-09 63.5 78 46.2
ECA233G1505 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-08 62.8 78 46.2
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-08 62.0 51 54.9
Sopen08g007750 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-08 61.6 78 43.6
ECA233G2364 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-08 61.2 78 44.9
ECA248G3034 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-08 61.2 78 44.9
Sopen01g014570 Solanum pennellii HOM05D000006 ORTHO05D000001 4.2e-08 61.2 78 41.0
Sopen02g005350 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-08 60.8 51 52.9
TPR.G7066 Trifolium pratense HOM05D000002 ORTHO05D000001 5.5e-08 60.8 50 56.0
SHI05324 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-08 60.5 51 54.9
Sopen07g022600 Solanum pennellii HOM05D000006 ORTHO05D000001 7.2e-08 60.5 51 51.0
Sopen10g006280 Solanum pennellii HOM05D000002 ORTHO05D000001 7.2e-08 60.5 51 52.9
FvH4_1g02351 Fragaria vesca HOM05D000002 ORTHO05D000001 9.4e-08 60.1 51 52.9
VMungo1309G0780 Vigna mungo HOM05D000002 ORTHO05D000001 9.4e-08 60.1 50 58.0
Sopen02g001520 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-07 59.7 51 52.9
TPR.G184 Trifolium pratense HOM05D000006 ORTHO05D000001 1.2e-07 59.7 51 52.9
Atru.chr10.881 Acer truncatum HOM05D000002 ORTHO05D000001 1.6e-07 59.3 77 45.5
PSO339G5984 Papaver somniferum HOM05D000002 ORTHO05D000001 1.6e-07 59.3 51 54.9
SHI29941 Sapria himalayana HOM05D000002 ORTHO05D000001 1.6e-07 59.3 63 49.2
SHI13139 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-07 58.9 50 54.0
SHI17135 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-07 58.9 51 56.9
Sopen11g016420 Solanum pennellii HOM05D000006 ORTHO05D000001 2.1e-07 58.9 78 42.3
FvH4_7g21181 Fragaria vesca HOM05D000002 ORTHO05D000001 2.7e-07 58.5 50 52.0
SHI28095 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-07 58.5 51 54.9
SHI46252 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-07 58.5 51 54.9
TPR.G1944 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-07 58.5 50 56.0
TPR.G35632 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-07 58.5 51 51.0
PSO384G2111 Papaver somniferum HOM05D000006 ORTHO05D000001 3.6e-07 58.2 72 44.4
Sopen08g018030 Solanum pennellii HOM05D000006 ORTHO05D000001 3.6e-07 58.2 78 43.6
PSO210G6389 Papaver somniferum HOM05D000006 ORTHO05D000001 4.7e-07 57.8 68 47.1
CSS0044837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-07 57.4 78 42.3
CSS0050085 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.1e-07 57.4 78 42.3
SHI10010 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-07 57.4 51 52.9
SHI19839 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-07 57.4 51 52.9
SHI30438 Sapria himalayana HOM05D000002 ORTHO05D000001 6.1e-07 57.4 51 52.9
CSS0018716 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-07 57.0 51 51.0
CSS0024117 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.0e-07 57.0 51 51.0
ECA247G3746 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-07 57.0 51 52.9
ECA248G3206 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-07 57.0 50 54.0
PSO063G3144 Papaver somniferum HOM05D000006 ORTHO05D000001 8.0e-07 57.0 63 49.2
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 8.0e-07 57.0 50 50.0
Rhsim12G0031500 Rhododendron simsii HOM05D000101 ORTHO05D003282 8.0e-07 57.0 63 49.2
TPR.G18981 Trifolium pratense HOM05D000006 ORTHO05D000001 8.0e-07 57.0 50 54.0
TPR.G40222 Trifolium pratense HOM05D000013 ORTHO05D000011 8.0e-07 57.0 50 54.0
CSS0037072 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.0e-06 56.6 51 51.0
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 1.0e-06 56.6 50 50.0
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 47.1
RcHm_v2.0_Chr3g0453691 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 47.1
RcHm_v2.0_Chr4g0409141 Rosa chinensis HOM05D000002 ORTHO05D000001 1.0e-06 56.6 50 50.0
SHI20274 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 52.9
SHI21792 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 52.9
SHI29707 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 52.9
SHI35072 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 54.9
SHI36310 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 54.9
Sopen01g025280 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 56.6 51 49.0
Sopen07g006000 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 56.6 61 42.6
Sopen07g022320 Solanum pennellii HOM05D000309 ORTHO05D000271 1.0e-06 56.6 61 42.6
Sopen08g007840 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 56.6 61 42.6
Sopen08g029210 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-06 56.6 61 42.6
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 1.0e-06 56.6 50 50.0
ECA233G1773 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 58.0
RcHm_v2.0_Chr1g0330721 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 56.0
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 50.0
Sopen06g019130 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 50.0
Sopen07g013220 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 49 51.0
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 50.0
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 50.0
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 50 50.0
CSS0030817 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 51.0
CSS0040477 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 50 50.0
CSS0041070 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 1.8e-06 55.8 51 51.0
ECA246G0354 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.8e-06 55.8 69 39.1
PSO832G0354 Papaver somniferum HOM05D000924 ORTHO05D007614 1.8e-06 55.8 50 52.0
SHI05194 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 51.0
SHI54047 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 52.9
Sopen01g020600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 45.1
Sopen06g007920 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 45.1
Sopen09g029100 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 45.1
Sopen11g017730 Solanum pennellii HOM05D000006 ORTHO05D000001 1.8e-06 55.8 50 48.0
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-06 55.8 51 45.1
arahy.Tifrunner.gnm1.ann1.2CQC5M Arachis hypogaea HOM05D000002 ORTHO05D000001 2.3e-06 55.5 50 52.0
HanXRQChr03g0062811 Helianthus annuus HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 49.0
SHI00044 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 62 46.8
SHI04495 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
SHI05308 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
SHI06261 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
SHI18782 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
SHI25733 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
SHI27456 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-06 55.5 51 51.0
ECA234G4446 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 58.0
ECA236G0095 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-06 55.1 62 43.5
ECA238G0905 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-06 55.1 51 49.0
ECA240G1794 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-06 55.1 62 43.5
HanXRQChr17g0546311 Helianthus annuus HOM05D000002 ORTHO05D000001 3.0e-06 55.1 78 39.7
MD10G1162100 Malus domestica HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 52.0
Manes.13G067366 Manihot esculenta HOM05D000002 ORTHO05D000001 3.0e-06 55.1 51 49.0
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 48.0
SHI03170 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 55.1 51 51.0
SHI16907 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-06 55.1 51 51.0
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 48.0
Sopen04g014730 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 55.1 62 45.2
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 48.0
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 48.0
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-06 55.1 50 48.0
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 50 52.0
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 50 52.0
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 50 52.0
ECA236G2735 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 47.1
ECA240G3412 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 52.9
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 4.0e-06 54.7 50 52.0
MD08G1027200 Malus domestica HOM05D000002 ORTHO05D000001 4.0e-06 54.7 77 40.3
SHI10122 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 51.0
SHI20055 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 51.0
SHI28896 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 51.0
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.0e-06 54.7 51 51.0
SHI35813 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-06 54.7 51 51.0
ECA233G2465 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 47.1
ECA236G2450 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 79 38.0
ECA236G3741 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
ECA236G4198 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 53 39.6
ECA238G2859 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
ECA247G1166 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
ECA247G3781 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
FvH4_5g12471 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-06 54.3 50 50.0
HanXRQChr11g0333161 Helianthus annuus HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 43.1
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 5.2e-06 54.3 50 54.0
SHI12350 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 51.0
SHI14043 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
SHI22013 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 51.0
SHI24797 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 49.0
SHI26279 Sapria himalayana HOM05D000002 ORTHO05D000001 5.2e-06 54.3 51 51.0
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 5.2e-06 54.3 50 46.0
AUR62037960 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.8e-06 53.9 70 44.3
HanXRQChr02g0036121 Helianthus annuus HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
HanXRQChr04g0099861 Helianthus annuus HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
HanXRQChr12g0367671 Helianthus annuus HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
MD10G1162300 Malus domestica HOM05D000002 ORTHO05D000001 6.8e-06 53.9 50 52.0
SHI02145 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
SHI21638 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
SHI27900 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
TPR.G10372 Trifolium pratense HOM05D000002 ORTHO05D000001 6.8e-06 53.9 51 49.0
ECA240G1692 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-06 53.5 50 44.0
ECA246G1084 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-06 53.5 51 47.1
ECA247G3614 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.8e-06 53.5 51 49.0
Manes.13G092690 Manihot esculenta HOM05D000002 ORTHO05D000001 8.8e-06 53.5 51 47.1
PSO170G6296 Papaver somniferum HOM05D000006 ORTHO05D000001 8.8e-06 53.5 50 46.0
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.8e-06 53.5 50 52.0
SHI28425 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-06 53.5 62 46.8
SHI47831 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-06 53.5 51 49.0
SHI48104 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-06 53.5 51 49.0
Sp2g09187 Schrenkiella parvula HOM05D000002 ORTHO05D000001 8.8e-06 53.5 54 44.4
Sopen11g024010 Solanum pennellii HOM05D000002 ORTHO05D000001 8.8e-06 53.5 53 39.6
TPR.G40017 Trifolium pratense HOM05D000006 ORTHO05D000001 8.8e-06 53.5 50 48.0


User provided reference genes

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