Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 0.0e+00 1214.9 601 100.0
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 8.1e-101 372.1 608 39.6
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 7.1e-97 359.0 589 38.2
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 7.9e-96 355.5 595 39.8
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.3e-95 354.8 653 37.1
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.8e-95 354.4 601 39.1
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 5.1e-95 352.8 607 38.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 5.1e-95 352.8 587 39.9
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 4.3e-94 349.7 597 39.0
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 2.1e-93 347.4 593 38.1
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 4.8e-93 346.3 592 37.7
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 4.5e-91 339.7 600 37.8
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.0e-90 338.6 592 38.3
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 2.2e-90 337.4 601 38.6
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 2.9e-90 337.0 585 39.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.1e-89 335.1 600 39.2
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 4.2e-89 333.2 601 36.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-88 331.6 559 37.4
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 2.7e-88 330.5 595 38.7
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.8e-87 327.8 595 38.5
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 2.3e-87 327.4 595 36.8
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.5e-86 323.9 591 38.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.7e-86 322.8 572 37.1
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 5.7e-86 322.8 605 37.4
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 3.7e-85 320.1 601 37.9
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 4.8e-85 319.7 610 35.2
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 4.8e-85 319.7 593 36.8
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 6.3e-85 319.3 593 36.6
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 8.2e-85 318.9 593 37.9
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.1e-84 318.5 593 36.8
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.1e-84 318.5 591 37.1
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.5e-83 314.7 603 37.3
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.2e-82 310.8 611 36.7
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 8.5e-82 308.9 603 36.3
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 2.5e-81 307.4 592 37.5
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 5.5e-81 306.2 591 36.7
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 7.2e-81 305.8 590 36.1
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 3.6e-80 303.5 597 37.2
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 1.8e-79 301.2 558 37.5
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.1e-78 298.5 603 36.5
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.5e-78 298.1 585 35.4
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 1.7e-77 294.7 586 36.5
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 1.7e-77 294.7 600 34.7
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 8.2e-77 292.4 592 35.8
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 8.2e-77 292.4 592 35.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 5.3e-76 289.7 600 33.5
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 6.9e-76 289.3 587 35.4
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.0e-75 287.7 584 36.3
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.3e-74 285.0 604 34.4
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.2e-73 280.0 585 34.4
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 9.4e-73 278.9 587 35.3
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 4.7e-72 276.6 589 34.0
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 4.7e-72 276.6 589 34.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.3e-71 274.2 586 35.3
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 5.1e-71 273.1 590 33.4
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 5.1e-71 273.1 583 34.3
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-70 271.6 592 34.3
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 4.4e-70 270.0 573 33.7
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 6.3e-69 266.2 580 34.1
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 6.3e-69 266.2 563 33.6
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 2.4e-68 264.2 561 34.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.4e-68 264.2 569 34.4
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.1e-68 263.5 565 34.0
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 5.3e-68 263.1 563 32.9
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 7.0e-68 262.7 582 32.1
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.5e-67 261.5 583 34.0
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 1.0e-66 258.8 586 33.1
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 8.5e-66 255.8 561 33.7
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 5.5e-65 253.1 596 32.0
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 7.2e-65 252.7 571 33.6
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.2e-64 251.9 594 32.2
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.1e-64 251.1 587 33.2
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.1e-64 251.1 416 39.2
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.7e-64 250.8 601 32.8
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 6.1e-64 249.6 587 33.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 6.1e-64 249.6 578 32.4
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.4e-63 248.4 583 32.8
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 5.2e-63 246.5 596 30.5
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 5.2e-63 246.5 562 32.4
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.1e-62 245.4 562 32.2
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 2.8e-61 240.7 573 33.2
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 2.8e-61 240.7 573 33.2
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.1e-60 238.8 604 30.5
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.4e-60 238.4 586 31.4
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.2e-59 235.3 570 31.9
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 2.6e-59 234.2 579 30.2
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 4.5e-59 233.4 543 31.9
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.4e-57 225.7 556 30.8
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.2e-56 225.3 597 30.2
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 1.2e-56 225.3 591 31.6
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 2.7e-56 224.2 555 31.5
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 3.0e-55 220.7 569 30.4
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 8.8e-55 219.2 519 31.6
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 1.9e-49 201.4 552 30.8
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.1e-48 198.0 566 30.9
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 8.0e-48 196.1 596 29.2
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-47 195.3 569 29.7
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 1.4e-47 195.3 555 29.5
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 2.3e-47 194.5 555 29.4
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 3.0e-47 194.1 594 29.6
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 9.8e-46 189.1 568 29.8
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 9.8e-46 189.1 585 28.7
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 2.8e-45 187.6 581 28.2
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.4e-44 185.3 557 30.0
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 4.1e-44 183.7 559 29.3
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 3.5e-43 180.6 572 29.4
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 3.3e-41 174.1 571 28.2
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.8e-39 168.3 582 27.3
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.8e-39 168.3 578 28.9
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 2.3e-39 167.9 603 28.4
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 2.0e-35 154.8 604 26.2
VMungo0251G3589 Vigna mungo HOM05D002759 ORTHO05D003290 6.8e-31 139.8 320 32.5
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 7.5e-30 136.3 410 28.3
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 3.5e-27 127.5 282 33.7
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 8.6e-26 122.9 296 33.8
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 7.3e-25 119.8 478 27.2
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 6.2e-24 116.7 316 31.0
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.2e-22 112.5 266 31.6
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 7.5e-22 109.8 396 24.5
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 9.8e-22 109.4 540 24.4
CARHR222380 Cardamine hirsuta HOM05D002759 ORTHO05D003290 7.0e-20 103.2 203 33.0
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 1.0e-18 99.4 333 31.5
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 2.5e-17 94.7 433 26.8
Hund17373 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.6e-14 84.7 315 30.5
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 6.4e-13 80.1 120 34.2
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 5.6e-09 67.0 493 21.1
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.1e-07 62.8 89 39.3
TAR636G1783 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.4e-07 62.4 45 64.4
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.8e-07 62.0 88 37.5
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.8e-07 62.0 88 37.5
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 3.1e-07 61.2 131 33.6
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 8.9e-07 59.7 353 24.6


User provided reference genes

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