Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26604 Sapria himalayana HOM05D002759 ORTHO05D003290 9.9e-129 463.4 222 100.0
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 1.5e-15 87.4 109 42.2
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 1.5e-15 87.4 98 45.9
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 1.9e-15 87.0 98 44.9
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 4.3e-15 85.9 90 44.4
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 5.6e-15 85.5 97 44.3
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-14 84.3 86 47.7
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.3e-14 84.3 86 47.7
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 2.1e-14 83.6 74 45.9
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.1e-14 83.6 108 40.7
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.1e-14 83.6 108 40.7
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 3.6e-14 82.8 74 45.9
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 3.6e-14 82.8 85 48.2
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 8.1e-14 81.6 85 48.2
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.1e-13 81.3 96 43.8
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.8e-13 80.5 120 37.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.0e-13 79.3 73 45.2
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 5.3e-13 79.0 76 51.3
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 5.3e-13 79.0 96 41.7
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 6.9e-13 78.6 73 50.7
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 6.9e-13 78.6 73 42.5
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 1.2e-12 77.8 80 48.8
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.5e-12 77.4 68 45.6
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 3.4e-12 76.3 73 47.9
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.4e-12 76.3 94 41.5
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 1.3e-11 74.3 103 37.9
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.3e-11 74.3 76 42.1
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 1.3e-11 74.3 94 42.6
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 1.3e-11 74.3 80 47.5
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.7e-11 73.9 117 30.8
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.2e-11 73.6 71 50.7
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 2.9e-11 73.2 164 31.7
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 3.8e-11 72.8 85 42.4
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 3.8e-11 72.8 73 43.8
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 6.4e-11 72.0 76 46.1
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 6.4e-11 72.0 92 42.4
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 8.4e-11 71.6 108 37.0
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.1e-10 71.2 72 47.2
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.4e-10 70.9 105 37.1
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.4e-10 70.9 80 46.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.4e-10 70.9 80 46.2
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 1.9e-10 70.5 76 42.1
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.4e-10 70.1 76 44.7
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-10 70.1 76 44.7
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.4e-10 70.1 76 44.7
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 2.4e-10 70.1 104 36.5
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.4e-10 70.1 80 46.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.4e-10 70.1 98 32.7
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 2.4e-10 70.1 88 39.8
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 3.2e-10 69.7 69 47.8
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 3.2e-10 69.7 72 45.8
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.2e-10 69.7 103 36.9
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 4.2e-10 69.3 107 36.4
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 4.2e-10 69.3 76 43.4
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 4.2e-10 69.3 76 43.4
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 4.2e-10 69.3 123 39.0
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 5.4e-10 68.9 79 38.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 7.1e-10 68.6 72 47.2
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.1e-10 68.6 80 45.0
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.6e-09 67.4 72 44.4
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.6e-09 67.4 72 44.4
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 1.6e-09 67.4 65 47.7
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 2.1e-09 67.0 76 42.1
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 2.1e-09 67.0 76 42.1
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 2.1e-09 67.0 64 51.6
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.1e-09 67.0 78 41.0
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 2.7e-09 66.6 76 40.8
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 3.5e-09 66.2 68 45.6
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 4.6e-09 65.9 69 42.0
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.0e-09 65.5 98 31.6
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 7.9e-09 65.1 72 44.4
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 7.9e-09 65.1 112 33.9
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 7.9e-09 65.1 67 43.3
arahy.Tifrunner.gnm1.ann1.HX0PY9 Arachis hypogaea HOM05D002759 ORTHO05D003290 1.0e-08 64.7 86 41.9
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 1.0e-08 64.7 103 36.9
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.3e-08 64.3 78 38.5
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.3e-08 63.5 97 36.1
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.3e-08 63.5 82 39.0
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-08 63.2 96 38.5
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 3.0e-08 63.2 96 38.5
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 8.7e-08 61.6 62 46.8
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 8.7e-08 61.6 74 44.6
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.6e-06 57.4 99 33.3
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 1.6e-06 57.4 86 36.0


User provided reference genes

Program Settings