Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 8.4e-279 963.0 468 100.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-164 582.4 447 60.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.8e-163 578.2 434 64.1
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.9e-163 577.4 444 62.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.9e-162 575.1 442 62.7
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 6.4e-162 574.7 442 61.5
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.1e-161 573.9 440 60.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.9e-161 573.2 438 62.3
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 7.1e-161 571.2 439 62.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-160 570.5 433 62.8
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-160 570.5 433 62.8
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-160 570.1 433 61.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-160 570.1 433 61.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.1e-160 569.7 455 60.2
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.1e-160 569.7 444 60.4
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.1e-160 569.7 443 61.4
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.7e-160 569.3 437 64.1
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.5e-160 568.9 433 61.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.5e-160 568.9 433 61.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.5e-160 568.9 433 63.0
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.0e-160 568.2 455 60.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 7.9e-160 567.8 439 59.7
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.9e-160 567.8 438 61.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.0e-159 567.4 450 60.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.3e-159 567.0 440 61.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.8e-159 566.6 453 59.8
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 3.9e-159 565.5 432 63.7
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-159 565.5 438 61.9
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 5.1e-159 565.1 450 60.2
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 5.1e-159 565.1 452 60.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 6.7e-159 564.7 428 65.0
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 6.7e-159 564.7 433 62.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 8.7e-159 564.3 447 62.2
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.1e-158 563.9 447 61.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-158 563.5 444 60.1
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.9e-158 563.1 447 61.5
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.5e-158 562.8 430 60.5
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.3e-158 562.4 445 60.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 4.3e-158 562.0 436 61.9
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.3e-158 562.0 451 59.6
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 7.4e-158 561.2 448 58.5
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.6e-158 560.8 447 59.1
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.6e-158 560.8 430 61.4
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.1e-157 559.7 449 59.9
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.7e-157 558.9 434 61.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 3.7e-157 558.9 435 61.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-156 557.4 445 59.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-156 557.4 445 59.3
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.9e-156 554.7 436 60.3
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 9.0e-156 554.3 434 61.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-155 553.9 433 62.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.2e-155 553.9 472 57.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 2.0e-155 553.1 441 59.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.6e-155 552.7 472 56.8
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.4e-155 552.4 440 59.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 3.4e-155 552.4 434 62.4
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.5e-155 552.0 441 59.9
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.0e-154 550.8 441 59.6
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-154 550.1 436 59.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.7e-154 550.1 435 60.5
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.7e-154 550.1 444 58.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.2e-154 549.7 446 58.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.8e-154 548.9 441 59.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 4.9e-154 548.5 436 59.6
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 8.4e-154 547.7 434 62.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.1e-153 547.4 435 60.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.5e-153 546.2 440 59.5
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.5e-153 546.2 433 60.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.5e-153 546.2 446 58.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.2e-153 545.8 430 59.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.5e-153 545.0 433 59.6
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 7.1e-153 544.7 442 59.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 9.3e-153 544.3 456 59.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 7.9e-152 541.2 446 58.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.0e-151 540.8 454 57.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.9e-151 538.9 458 57.9
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.7e-151 538.1 431 60.6
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.5e-150 536.2 429 59.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.5e-150 536.2 440 57.7
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 4.3e-150 535.4 476 55.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.3e-149 533.9 468 56.8
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.3e-149 533.9 431 60.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.6e-149 533.5 448 57.8
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.1e-149 533.1 459 57.7
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.8e-149 532.7 428 60.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.7e-149 532.3 419 60.4
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 4.8e-149 531.9 442 57.9
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 6.2e-149 531.6 452 57.5
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.2e-149 531.6 431 59.9
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.1e-148 530.8 447 56.8
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-148 530.8 448 58.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.1e-148 530.8 448 57.4
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.4e-148 530.4 455 57.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.4e-148 529.6 434 58.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.4e-148 529.6 436 59.4
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.0e-148 528.9 460 57.0
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.0e-148 527.7 444 57.4
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.4e-147 525.8 438 57.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 7.6e-147 524.6 453 56.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.3e-146 523.9 428 57.7
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.7e-146 523.5 433 57.3
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 3.2e-145 519.2 449 55.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.2e-144 517.3 426 58.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.0e-143 514.2 393 65.1
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-143 513.8 437 57.7
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.2e-141 506.5 449 54.1
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.2e-137 492.7 434 56.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.7e-134 481.9 432 55.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.2e-131 474.2 381 60.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.4e-131 472.6 388 60.6
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 9.4e-129 464.5 442 52.9
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 4.7e-128 462.2 423 54.6
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.6e-123 446.4 413 54.0
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 5.0e-122 442.2 312 66.3
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.7e-114 417.2 312 62.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.1e-113 414.5 292 67.1
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.0e-111 406.4 311 61.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 8.3e-109 398.3 307 62.2
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.4e-108 397.5 432 47.0
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.5e-107 392.5 456 44.1
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.2e-105 386.3 278 65.8
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.4e-103 380.9 404 46.0
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 8.8e-103 378.3 381 52.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 2.5e-89 333.6 247 66.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-84 317.4 240 63.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.1e-84 316.2 242 62.8
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 8.6e-74 282.0 401 42.1
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 8.6e-74 282.0 335 45.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.3e-71 273.9 215 60.5
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-63 248.1 161 79.5
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 8.9e-63 245.4 203 60.6
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.6e-62 243.8 201 60.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 5.8e-62 242.7 201 55.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.2e-61 240.7 269 50.9
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.7e-58 228.8 158 73.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 3.4e-54 216.9 164 60.4
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.6e-51 206.5 197 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.8e-47 194.5 202 50.5
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.8e-47 194.5 184 58.7
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-43 181.8 168 54.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 7.9e-43 179.1 170 54.1
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-42 176.4 429 27.7
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-41 175.3 161 54.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-41 174.9 158 55.1
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.5e-41 174.9 158 55.1
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 5.6e-41 172.9 127 64.6
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.1e-36 156.0 109 61.5
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.1e-33 148.7 164 44.5
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.7e-32 143.7 153 47.1
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 4.5e-30 136.7 207 35.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.8e-29 133.7 109 57.8
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.2e-28 130.2 139 46.8
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.9e-26 123.6 84 67.9
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.7e-24 117.1 86 59.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-23 115.2 76 64.5
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.4e-23 115.2 76 64.5
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.4e-22 110.5 95 58.9
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.2e-19 102.1 87 54.0
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 6.1e-19 99.8 85 51.8
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.0e-17 94.7 89 52.8
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.5e-14 83.6 73 52.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-08 65.1 88 47.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.0e-06 58.2 61 52.5


User provided reference genes

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