Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.2e-56 223.0 120 100.0
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.3e-15 85.9 50 78.0
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 6.8e-15 84.3 50 78.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 8.8e-15 84.0 51 76.5
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.7e-13 79.7 50 68.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.2e-13 79.3 50 68.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.7e-13 78.6 50 70.0
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 3.7e-13 78.6 51 66.7
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.3e-13 77.8 86 51.2
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 6.3e-13 77.8 50 68.0
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.3e-13 77.8 50 66.0
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 6.3e-13 77.8 49 67.3
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.1e-12 77.0 50 70.0
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.1e-12 77.0 50 62.0
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.4e-12 76.6 50 68.0
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.8e-12 76.3 50 70.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.4e-12 75.9 47 70.2
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.1e-12 75.5 63 58.7
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 4.1e-12 75.1 64 59.4
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.1e-12 75.1 62 61.3
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.1e-12 75.1 62 61.3
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 5.4e-12 74.7 49 67.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 7.0e-12 74.3 62 59.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 9.1e-12 73.9 50 66.0
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 9.1e-12 73.9 50 60.0
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 9.1e-12 73.9 50 60.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 9.1e-12 73.9 76 48.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 9.1e-12 73.9 76 48.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.2e-11 73.6 62 59.7
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.2e-11 73.6 64 59.4
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.2e-11 73.6 62 59.7
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-11 73.2 62 59.7
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-11 73.2 62 59.7
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-11 73.2 62 59.7
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.6e-11 73.2 50 68.0
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.6e-11 73.2 50 60.0
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 2.0e-11 72.8 50 64.0
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 3.5e-11 72.0 62 59.7
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 3.5e-11 72.0 62 58.1
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 3.5e-11 72.0 47 68.1
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 4.5e-11 71.6 62 58.1
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 4.5e-11 71.6 62 58.1
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.5e-11 71.6 62 59.7
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 4.5e-11 71.6 50 60.0
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 4.5e-11 71.6 50 60.0
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 4.5e-11 71.6 50 60.0
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 5.9e-11 71.2 62 58.1
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 5.9e-11 71.2 50 58.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 7.7e-11 70.9 48 60.4
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 7.7e-11 70.9 50 64.0
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 1.0e-10 70.5 51 60.8
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.7e-10 69.7 50 66.0
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.7e-10 69.7 50 62.0
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 2.3e-10 69.3 50 62.0
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 2.3e-10 69.3 50 62.0
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 2.9e-10 68.9 50 62.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.8e-10 68.6 47 59.6
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.8e-10 68.6 57 50.9
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 5.0e-10 68.2 47 63.8
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 6.6e-10 67.8 50 58.0
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 8.6e-10 67.4 50 60.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.9e-09 66.2 45 62.2
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.2e-09 65.1 84 50.0
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 7.2e-09 64.3 61 49.2
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 2.1e-08 62.8 50 56.0
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 2.8e-08 62.4 54 57.4
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 2.8e-08 62.4 50 50.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 3.6e-08 62.0 50 52.0
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.7e-08 61.6 50 58.0
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 6.1e-08 61.2 45 60.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.0e-07 60.5 50 52.0
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 3.0e-07 58.9 49 51.0
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 6.8e-07 57.8 54 48.1
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 8.9e-07 57.4 47 59.6
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 8.9e-07 57.4 46 54.3
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 8.9e-07 57.4 57 49.1
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.2e-06 57.0 46 54.3
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-06 56.6 56 50.0
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 2.6e-06 55.8 46 56.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.6e-06 55.8 50 52.0
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.6e-06 55.8 51 52.9
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 3.4e-06 55.5 48 47.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 5.7e-06 54.7 50 52.0
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 5.7e-06 54.7 46 50.0
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 5.7e-06 54.7 50 44.0
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 7.5e-06 54.3 48 50.0
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 7.5e-06 54.3 48 50.0
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 7.5e-06 54.3 57 43.9
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 9.8e-06 53.9 51 47.1


User provided reference genes

Program Settings