Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26377 Sapria himalayana HOM05D002318 ORTHO05D004713 1.1e-34 149.4 74 100.0
Zm00001eb004120 Zea mays HOM05D002318 ORTHO05D004713 1.9e-12 75.5 45 77.8
CiPaw.05G127900 Carya illinoinensis HOM05D002318 ORTHO05D004713 3.3e-12 74.7 45 75.6
Nitab4.5_0000014g0270 Nicotiana tabacum HOM05D002318 ORTHO05D004713 3.3e-12 74.7 55 65.5
Oeu050176.1 Olea europaea HOM05D002318 ORTHO05D004713 3.3e-12 74.7 45 77.8
vmacro01329 Vaccinium macrocarpon HOM05D002318 ORTHO05D004713 3.3e-12 74.7 46 73.9
Actinidia31947 Actinidia chinensis HOM05D002318 ORTHO05D004713 4.3e-12 74.3 45 75.6
Rhsim12G0076600 Rhododendron simsii HOM05D002318 ORTHO05D004713 5.6e-12 73.9 45 75.6
CiPaw.06G090500 Carya illinoinensis HOM05D002318 ORTHO05D004713 7.4e-12 73.6 45 75.6
MBI17_g34378_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 7.4e-12 73.6 54 64.8
Medtr4g082640 Medicago truncatula HOM05D002318 ORTHO05D004713 7.4e-12 73.6 45 73.3
SEGI_36557 Sequoiadendron giganteum HOM05D002318 ORTHO05D004713 7.4e-12 73.6 45 73.3
THA.LOC104808588 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 7.4e-12 73.6 45 75.6
Zm00001eb047110 Zea mays HOM05D002318 ORTHO05D004713 7.4e-12 73.6 45 75.6
Atru.chr11.1689 Acer truncatum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Aa31LG7G8480 Aethionema arabicum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
CAN.G1340.12 Capsicum annuum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Ciclev10033452m.g Citrus clementina HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Cc11_g12370 Coffea canephora HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
COL.COLO4_27932 Corchorus olitorius HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
MBI17_g16776_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Nitab4.5_0000334g0250 Nicotiana tabacum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Nitab4.5_0002806g0070 Nicotiana tabacum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Peaxi162Scf00314g00033 Petunia axillaris HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Rhsim10G0189100 Rhododendron simsii HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Solyc05g012610.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Sopen05g007440 Solanum pennellii HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
PGSC0003DMG401028328 Solanum tuberosum HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
THA.LOC104822900 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
HPP92_022583 Vanilla planifolia HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
GSVIVG01012178001 Vitis vinifera HOM05D002318 ORTHO05D004713 9.6e-12 73.2 45 75.6
Hma1.2p1_0354F.1_g133630 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 1.3e-11 72.8 46 71.7
Sed0000373 Sechium edule HOM05D002318 ORTHO05D004713 1.3e-11 72.8 45 75.6
TAR374G1646 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.3e-11 72.8 45 75.6
arahy.Tifrunner.gnm1.ann1.R2RWAX Arachis hypogaea HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 73.3
arahy.Tifrunner.gnm1.ann1.XTY9PQ Arachis hypogaea HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 73.3
CDE04G3596 Ceratophyllum demersum HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 75.6
Ca_25952_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 73.3
Lj3A1032T69 Lonicera japonica HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 75.6
Manes.05G107600 Manihot esculenta HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 73.3
Psat7g154360 Pisum sativum HOM05D002318 ORTHO05D004713 1.6e-11 72.4 44 75.0
TPR.G34090 Trifolium pratense HOM05D002318 ORTHO05D004713 1.6e-11 72.4 45 73.3
Actinidia33242 Actinidia chinensis HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Aa31LG4G11530 Aethionema arabicum HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Aqoxy3G03554 Aquilegia oxysepala HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
BcaB05g24443 Brassica carinata HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
A02p15840 Brassica napus HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
C06p40580 Brassica napus HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
BolC6t39374H Brassica oleracea HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
CSS0040724 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Cpa.g.sc1.88 Carica papaya HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 75.6
DCAR_007181 Daucus carota HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Eucgr.G02463 Eucalyptus grandis HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Manes.01G030200 Manihot esculenta HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Os03g0151100 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
Os10g0444400 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
PGR102G0166 Punica granatum HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
SalBow8G0328 Salvia bowleyana HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
SMO118G0381 Selaginella moellendorffii HOM05D002318 ORTHO05D004713 2.1e-11 72.0 53 62.3
Solyc04g005490.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 2.1e-11 72.0 45 73.3
AL2G28450 Arabidopsis lyrata HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
AT1G69340 Arabidopsis thaliana HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
MSTRG.13441 Avicennia marina HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 75.6
Carub.0002s1594 Capsella rubella HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Thhalv10018352m.g Eutrema salsugineum HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Glyma.01G055300 Glycine max HOM05D002318 ORTHO05D004713 2.8e-11 71.6 44 75.0
Gohir.A05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Gohir.D05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Gorai.009G326000 Gossypium raimondii HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Oeu023724.3 Olea europaea HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
PSO017G1201 Papaver somniferum HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
PSO478G2077 Papaver somniferum HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Sp5g24400 Schrenkiella parvula HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
Hund05861 Selenicereus undatus HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 2.8e-11 71.6 45 73.3
MSTRG.7765 Avicennia marina HOM05D002318 ORTHO05D004713 3.7e-11 71.2 44 75.0
Ca_04909_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 3.7e-11 71.2 44 75.0
ECA233G0414 Erigeron canadensis HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 73.3
HanXRQChr08g0211511 Helianthus annuus HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 73.3
Lj6A782G109 Lonicera japonica HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 73.3
Lalb_Chr17g0340991 Lupinus albus HOM05D002318 ORTHO05D004713 3.7e-11 71.2 44 75.0
Phvul.002G069100 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 3.7e-11 71.2 44 75.0
Phvul.002G167900 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 71.1
QL03p070842 Quercus lobata HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 73.3
SGA_v2.0_scaffold63G21634 Striga asiatica HOM05D002318 ORTHO05D004713 3.7e-11 71.2 45 73.3
VMungo1215G3203 Vigna mungo HOM05D002318 ORTHO05D004713 3.7e-11 71.2 44 75.0
Ah.02g126610 Amaranthus hybridus HOM05D002318 ORTHO05D004713 4.8e-11 70.9 45 71.1
ATR0111G025 Amborella trichopoda HOM05D002318 ORTHO05D004713 4.8e-11 70.9 45 73.3
Migut.L01222 Erythranthe guttata HOM05D002318 ORTHO05D004713 4.8e-11 70.9 45 73.3
Gohir.A13G080000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 4.8e-11 70.9 45 71.1
TWI79G0696 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 4.8e-11 70.9 45 73.3
CARHR062230 Cardamine hirsuta HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 73.3
ClCG09G020740 Citrullus lanatus HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 73.3
Dinv34115 Davidia involucrata HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 71.1
Eucgr.B03179 Eucalyptus grandis HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 71.1
Lj2g0006739 Lotus japonicus HOM05D002318 ORTHO05D004713 6.2e-11 70.5 44 75.0
Sed0026215 Sechium edule HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 73.3
Sopen04g001510 Solanum pennellii HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 71.1
PGSC0003DMG400002818 Solanum tuberosum HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 71.1
TWI75G1795 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 73.3
VMungo0251G1052 Vigna mungo HOM05D002318 ORTHO05D004713 6.2e-11 70.5 45 71.1
Actinidia12317 Actinidia chinensis HOM05D002318 ORTHO05D004713 8.1e-11 70.1 45 73.3
Glyma.02G113700 Glycine max HOM05D002318 ORTHO05D004713 8.1e-11 70.1 44 75.0
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 8.1e-11 70.1 45 73.3
Pp3c3_20410 Physcomitrium patens HOM05D002318 ORTHO05D004713 8.1e-11 70.1 45 71.1
BcaC03g15074 Brassica carinata HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
BolC2t08701H Brassica oleracea HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
CANSAT64G1373 Cannabis sativa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 73.3
FvH4_4g30490 Fragaria vesca HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
FAN12G1805 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
FAN17G0182 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
FAN22G1596 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
MD13G1066000 Malus domestica HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
Medtr5g043560 Medicago truncatula HOM05D002318 ORTHO05D004713 1.1e-10 69.7 44 72.7
Potri.008G093100 Populus trichocarpa HOM05D002318 ORTHO05D004713 1.1e-10 69.7 44 72.7
Prupe.1G282100 Prunus persica HOM05D002318 ORTHO05D004713 1.1e-10 69.7 45 71.1
EL10Ac6g14956 Beta vulgaris HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 68.9
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 73.3
MELO3C002919.2 Cucumis melo HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 71.1
CsaV3_5G025630 Cucumis sativus L. HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 71.1
Glyma.20G027400 Glycine max HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 68.9
Nn4g23328 Nelumbo nucifera HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 71.1
Potri.010G161500 Populus trichocarpa HOM05D002318 ORTHO05D004713 1.4e-10 69.3 45 71.1
Psat2g128200 Pisum sativum HOM05D002318 ORTHO05D004713 1.8e-10 68.9 44 70.5
AUR62007956 Chenopodium quinoa HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 68.9
Duzib268G0995 Durio zibethinus HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 73.3
ECA246G1706 Erigeron canadensis HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 68.9
Hma1.2p1_0357F.1_g134430 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 71.1
MD16G1064800 Malus domestica HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 68.9
RcHm_v2.0_Chr4g0438861 Rosa chinensis HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 68.9
Thecc.02G336400 Theobroma cacao HOM05D002318 ORTHO05D004713 2.4e-10 68.6 45 71.1
AUR62003137 Chenopodium quinoa HOM05D002318 ORTHO05D004713 3.1e-10 68.2 45 68.9
Duzib248G0382 Durio zibethinus HOM05D002318 ORTHO05D004713 3.1e-10 68.2 45 71.1
Duzib251G0769 Durio zibethinus HOM05D002318 ORTHO05D004713 3.1e-10 68.2 45 71.1
Migut.E00062 Erythranthe guttata HOM05D002318 ORTHO05D004713 3.1e-10 68.2 45 68.9
Sabra08G0069900 Salix brachista HOM05D002318 ORTHO05D004713 4.0e-10 67.8 44 70.5
TPR.G22404 Trifolium pratense HOM05D002318 ORTHO05D004713 4.0e-10 67.8 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.1854 Anthoceros agrestis HOM05D002318 ORTHO05D004713 5.3e-10 67.4 45 66.7
CBR_g32703 Chara braunii HOM05D000019 ORTHO05D000937 5.3e-10 67.4 46 67.4
Gohir.D13G079800 Gossypium hirsutum HOM05D002318 ORTHO05D004713 5.3e-10 67.4 45 66.7
Gorai.013G091300 Gossypium raimondii HOM05D002318 ORTHO05D004713 5.3e-10 67.4 45 66.7
Lalb_Chr16g0385621 Lupinus albus HOM05D002318 ORTHO05D004713 6.9e-10 67.0 45 68.9
Pp3c13_22190 Physcomitrium patens HOM05D002318 ORTHO05D004713 6.9e-10 67.0 45 66.7
CBR_g6630 Chara braunii HOM05D002318 ORTHO05D004713 1.2e-09 66.2 45 68.9
Mapoly0008s0106 Marchantia polymorpha HOM05D002318 ORTHO05D004713 1.2e-09 66.2 45 66.7
PSO409G0025 Papaver somniferum HOM05D002318 ORTHO05D004713 1.5e-09 65.9 39 76.9
Lsat_1_v5_gn_3_56320 Lactuca sativa HOM05D002318 ORTHO05D004713 2.0e-09 65.5 45 62.2
arahy.Tifrunner.gnm1.ann1.MP45AK Arachis hypogaea HOM05D002318 ORTHO05D004713 2.6e-09 65.1 44 70.5
arahy.Tifrunner.gnm1.ann1.KSM55U Arachis hypogaea HOM05D002318 ORTHO05D004713 1.0e-08 63.2 44 68.2
HanXRQChr17g0545451 Helianthus annuus HOM05D002318 ORTHO05D004713 4.9e-08 60.8 45 60.0


User provided reference genes

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