Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 4.0e-87 325.5 276 100.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.6e-56 223.8 219 79.5
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 7.6e-54 214.9 292 61.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.8e-50 203.8 245 73.1
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 8.7e-50 201.4 256 65.6
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 8.7e-50 201.4 251 72.9
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 1.1e-49 201.1 243 73.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.5e-49 199.9 243 72.4
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 7.4e-49 198.4 246 72.8
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 7.4e-49 198.4 244 73.0
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.3e-48 197.6 250 66.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.8e-48 196.4 245 71.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.7e-48 196.1 250 70.4
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.8e-48 195.7 244 72.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 8.2e-48 194.9 257 63.8
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.2e-48 194.9 243 72.0
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.5e-46 190.7 243 71.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 2.6e-46 189.9 251 69.7
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.6e-46 189.9 235 72.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 3.4e-46 189.5 243 71.2
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 4.5e-46 189.1 262 62.2
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 4.5e-46 189.1 243 70.8
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 5.9e-46 188.7 250 70.0
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.9e-46 188.7 242 71.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.9e-46 188.7 243 69.1
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 5.9e-46 188.7 243 71.2
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 5.9e-46 188.7 268 42.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.7e-46 188.3 240 71.2
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-45 187.6 242 71.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.3e-45 187.6 244 71.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.7e-45 187.2 250 69.6
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.7e-45 187.2 253 70.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.7e-45 187.2 250 70.0
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.7e-45 187.2 250 69.2
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 2.2e-45 186.8 242 70.2
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-45 186.8 247 69.6
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.9e-45 186.4 250 70.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 3.8e-45 186.0 205 59.5
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.8e-45 186.0 243 70.4
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 3.8e-45 186.0 240 70.8
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 6.5e-45 185.3 247 70.9
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 6.5e-45 185.3 251 69.7
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 8.5e-45 184.9 243 71.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-44 184.5 245 69.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.4e-44 184.1 247 68.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.4e-44 184.1 243 70.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.4e-44 184.1 244 70.1
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.9e-44 183.7 242 71.9
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.9e-44 183.7 241 66.4
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.9e-44 183.7 241 71.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 1.9e-44 183.7 239 71.1
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.9e-44 183.7 251 69.3
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.9e-44 183.7 227 74.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.5e-44 183.3 251 69.3
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 2.5e-44 183.3 251 69.7
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.5e-44 183.3 243 70.4
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-44 183.0 251 69.7
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 3.2e-44 183.0 251 69.7
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.2e-44 183.0 244 70.9
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.2e-44 182.6 247 69.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.2e-44 182.6 247 69.2
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.5e-44 182.2 248 69.8
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 5.5e-44 182.2 241 71.4
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 7.2e-44 181.8 242 70.7
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 7.2e-44 181.8 241 69.7
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.2e-44 181.8 248 69.4
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 7.2e-44 181.8 241 71.4
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 7.2e-44 181.8 241 71.4
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 9.4e-44 181.4 243 71.6
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 9.4e-44 181.4 245 69.8
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.2e-43 181.0 251 68.1
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.2e-43 181.0 243 70.4
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.2e-43 181.0 288 74.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.6e-43 180.6 245 69.0
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.6e-43 180.6 251 68.9
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.1e-43 180.3 241 70.5
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.1e-43 180.3 243 70.8
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.7e-43 179.9 243 69.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.7e-43 179.9 253 67.6
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.7e-43 179.9 243 69.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.7e-43 179.9 240 70.4
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.6e-43 179.1 243 69.5
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.6e-43 179.1 244 69.3
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 4.6e-43 179.1 251 68.5
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.6e-43 179.1 240 70.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 7.9e-43 178.3 243 69.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 7.9e-43 178.3 242 69.8
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.0e-42 177.9 243 68.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.0e-42 177.9 227 72.7
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.0e-42 177.9 247 68.0
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.4e-42 177.6 242 69.4
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.4e-42 177.6 251 68.1
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-42 177.6 243 69.5
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.8e-42 177.2 249 67.5
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 3.0e-42 176.4 241 69.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 3.0e-42 176.4 241 69.3
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 3.9e-42 176.0 251 67.7
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 3.9e-42 176.0 251 67.3
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 3.9e-42 176.0 250 68.0
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.1e-42 175.6 241 68.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 6.7e-42 175.3 241 69.3
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 6.7e-42 175.3 244 61.9
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 8.8e-42 174.9 242 69.0
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.0e-41 173.7 246 66.7
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.0e-41 173.7 239 66.9
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 2.5e-41 173.3 121 71.1
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.5e-41 173.3 249 68.7
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.3e-41 172.9 247 68.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 3.3e-41 172.9 241 68.9
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.3e-41 172.9 251 67.3
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.3e-41 172.9 233 69.5
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.3e-41 172.9 233 69.5
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 5.7e-41 172.2 241 68.9
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 5.7e-41 172.2 239 69.5
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 9.7e-41 171.4 220 73.2
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.3e-40 171.0 243 67.5
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.7e-40 170.6 235 70.6
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.8e-40 169.9 235 69.8
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-40 169.9 220 72.7
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.8e-40 169.9 240 67.5
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 4.1e-39 166.0 246 66.7
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.2e-38 164.5 248 63.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 7.7e-38 161.8 273 72.9
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-37 161.0 269 63.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-37 161.0 269 63.6
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 2.9e-37 159.8 239 67.8
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.0e-37 159.1 248 62.9
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 1.1e-36 157.9 92 81.5
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.4e-36 157.5 93 80.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.4e-36 157.5 250 64.8
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.2e-36 156.4 243 66.3
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-36 156.4 96 77.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-36 156.4 96 77.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.2e-36 155.2 241 66.4
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 9.4e-36 154.8 247 62.8
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.6e-35 154.1 248 60.5
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.1e-35 153.7 101 75.2
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.7e-35 152.5 249 64.7
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 4.7e-35 152.5 102 74.5
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.0e-34 151.4 95 74.7
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.0e-34 151.4 96 77.1
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.0e-34 151.4 96 77.1
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.4e-34 151.0 94 75.5
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-34 151.0 93 78.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 6.7e-34 148.7 101 72.3
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 8.8e-34 148.3 259 62.9
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 8.8e-34 148.3 87 81.6
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.1e-33 147.9 99 71.7
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.6e-33 146.7 86 80.2
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.3e-33 146.4 241 64.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 4.4e-33 146.0 101 68.3
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 5.7e-33 145.6 100 71.0
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.4e-33 145.2 202 60.9
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 1.3e-32 144.4 247 60.3
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.7e-32 144.1 240 64.6
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.5e-30 137.5 234 61.1
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.9e-28 130.6 248 62.5
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.2e-27 127.9 227 63.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 4.7e-27 125.9 103 55.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 3.5e-22 109.8 77 68.8
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 4.5e-22 109.4 200 68.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.0e-21 108.2 88 59.1
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.9e-21 106.7 82 63.4
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-20 104.4 104 52.9
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.5e-17 94.4 72 61.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-16 90.5 180 69.4
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-14 84.7 243 56.8
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.5e-14 82.8 46 82.6
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-14 82.8 50 72.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.9e-14 82.4 123 77.2
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 5.0e-13 79.3 112 45.5
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.0e-13 79.3 162 72.8
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 6.5e-13 79.0 46 80.4
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 3.2e-12 76.6 76 52.6
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.2e-12 76.3 65 61.5
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 5.5e-12 75.9 112 43.8
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 5.5e-12 75.9 46 78.3
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 3.0e-10 70.1 49 73.5
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 6.8e-10 68.9 68 55.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 4.8e-08 62.8 98 41.8
SEGI_01859 Sequoiadendron giganteum HOM05D003751 ORTHO05D017703 4.1e-07 59.7 40 70.0
Os03g0436600 Oryza sativa ssp. japonica HOM05D001169 ORTHO05D001002 4.5e-06 56.2 94 37.2


User provided reference genes

Program Settings