Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.1e-65 253.1 123 100.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.1e-41 173.3 108 76.9
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 9.6e-41 170.2 102 76.5
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.3e-40 169.9 102 76.5
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 3.7e-40 168.3 111 72.1
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.2e-40 167.5 100 77.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.4e-39 166.4 110 70.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.8e-39 166.0 99 77.8
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 2.4e-39 165.6 97 77.3
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 2.4e-39 165.6 100 76.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 3.1e-39 165.2 94 78.7
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.1e-39 165.2 94 79.8
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 9.0e-39 163.7 89 82.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.5e-38 162.9 85 84.7
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.5e-38 162.9 111 70.3
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 99 73.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.0e-38 162.5 111 71.2
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.6e-38 162.2 101 74.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.5e-38 161.4 91 78.0
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 4.5e-38 161.4 90 80.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 5.8e-38 161.0 104 73.1
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.9e-38 160.2 92 77.2
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 9.9e-38 160.2 97 74.2
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.7e-37 159.5 83 83.1
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.7e-37 159.5 95 73.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.7e-37 159.5 111 66.7
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.7e-37 159.5 107 68.2
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.9e-37 158.7 90 77.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.9e-37 158.7 101 72.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.9e-37 158.7 101 72.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.9e-37 158.7 95 78.9
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.8e-37 158.3 90 77.8
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.8e-37 158.3 91 79.1
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 4.9e-37 157.9 102 72.5
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 4.9e-37 157.9 98 71.4
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 6.4e-37 157.5 91 76.9
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.4e-37 157.5 86 80.2
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.4e-37 157.5 86 80.2
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 6.4e-37 157.5 101 73.3
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 6.4e-37 157.5 97 72.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 8.4e-37 157.1 111 65.8
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 8.4e-37 157.1 88 79.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 8.4e-37 157.1 90 77.8
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.1e-36 156.8 94 74.5
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.1e-36 156.8 87 78.2
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.1e-36 156.8 87 77.0
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.4e-36 156.4 99 73.7
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.4e-36 156.4 99 71.7
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.4e-36 156.4 100 71.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.9e-36 156.0 92 76.1
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.9e-36 156.0 90 76.7
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.4e-36 155.6 82 82.9
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.4e-36 155.6 103 70.9
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.2e-36 155.2 99 72.7
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 77.9
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 3.2e-36 155.2 86 80.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.2e-36 154.8 97 72.2
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.2e-36 154.8 97 72.2
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 4.2e-36 154.8 113 61.1
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 4.2e-36 154.8 99 68.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 4.2e-36 154.8 90 77.8
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 5.5e-36 154.5 107 64.5
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 7.1e-36 154.1 86 76.7
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 7.1e-36 154.1 86 76.7
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 9.3e-36 153.7 86 75.6
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 9.3e-36 153.7 86 75.6
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 9.3e-36 153.7 86 76.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 9.3e-36 153.7 97 70.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.6e-35 152.9 86 76.7
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.6e-35 152.9 86 76.7
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.6e-35 152.9 107 66.4
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.1e-35 152.5 86 75.6
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-35 152.5 78 83.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.7e-35 152.1 94 75.5
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.7e-35 152.1 86 76.7
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.7e-35 152.1 86 76.7
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.7e-35 152.1 91 72.5
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.7e-35 152.1 86 76.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.7e-35 152.1 87 75.9
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.7e-35 152.1 112 67.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 3.5e-35 151.8 84 78.6
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 4.6e-35 151.4 86 74.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 4.6e-35 151.4 86 74.4
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 4.6e-35 151.4 86 74.4
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 4.6e-35 151.4 86 74.4
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 4.6e-35 151.4 86 74.4
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 6.0e-35 151.0 86 75.6
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 6.0e-35 151.0 86 75.6
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.0e-35 151.0 110 64.5
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.9e-35 150.6 78 82.1
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 7.9e-35 150.6 78 82.1
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 1.0e-34 150.2 111 62.2
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.0e-34 150.2 77 83.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.0e-34 150.2 77 83.1
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.3e-34 149.8 112 67.0
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.3e-34 149.1 86 75.6
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-34 149.1 78 80.8
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 2.3e-34 149.1 108 67.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.3e-34 149.1 92 72.8
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.0e-34 148.7 102 68.6
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 3.9e-34 148.3 90 74.4
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.1e-34 147.9 102 66.7
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.1e-34 147.9 92 72.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.5e-33 146.4 103 65.0
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.9e-33 146.0 116 57.8
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.5e-33 145.6 111 57.7
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.5e-33 145.6 100 66.0
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.5e-33 145.6 76 81.6
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 3.3e-33 145.2 96 67.7
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.3e-33 145.2 83 73.5
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.3e-33 144.8 79 79.7
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.4e-33 144.1 89 70.8
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.6e-33 143.7 88 71.6
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.6e-32 142.9 103 63.1
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.1e-32 142.5 92 68.5
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 2.8e-32 142.1 78 76.9
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 2.8e-32 142.1 79 77.2
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 3.7e-32 141.7 91 69.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.8e-32 141.4 85 70.6
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 6.2e-32 141.0 79 74.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.1e-31 140.2 88 70.5
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.4e-31 139.0 88 69.3
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.4e-31 139.0 85 72.9
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.1e-31 138.7 88 69.3
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.1e-31 138.7 88 69.3
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 5.3e-31 137.9 105 61.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.9e-31 137.5 105 58.1
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 6.9e-31 137.5 105 61.0
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.5e-30 136.3 81 72.8
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.0e-30 136.0 88 68.2
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.7e-29 132.9 84 67.9
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 4.2e-28 128.3 83 67.5
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.1e-28 127.5 77 72.7
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.8e-26 122.9 101 57.4
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 3.3e-25 118.6 77 70.1
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 8.2e-24 114.0 58 86.2
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 5.0e-21 104.8 79 60.8
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.1e-20 103.6 71 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 7.2e-20 100.9 69 66.7
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 7.2e-20 100.9 77 59.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.0e-18 97.1 61 75.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.2e-16 89.4 85 49.4
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.2e-16 89.4 58 67.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 3.1e-15 85.5 73 50.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-12 76.3 60 63.3
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 4.7e-11 71.6 64 51.6
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.4e-10 70.1 61 47.5
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.1e-07 60.5 42 66.7


User provided reference genes

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