Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26123 Sapria himalayana HOM05D004461 ORTHO05D029960 3.2e-75 285.0 145 100.0
Duzib212G0381 Durio zibethinus HOM05D004461 ORTHO05D005543 1.4e-19 100.1 85 64.7
DCAR_005452 Daucus carota HOM05D004461 ORTHO05D005543 1.9e-19 99.8 74 66.2
Actinidia18410 Actinidia chinensis HOM05D004461 ORTHO05D005543 2.5e-19 99.4 83 67.5
CSS0001430 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 2.5e-19 99.4 83 66.3
Rhsim09G0007800 Rhododendron simsii HOM05D004461 ORTHO05D005543 4.2e-19 98.6 74 66.2
COL.COLO4_08073 Corchorus olitorius HOM05D004461 ORTHO05D005543 7.1e-19 97.8 74 68.9
ClCG11G016890 Citrullus lanatus HOM05D004461 ORTHO05D005543 9.3e-19 97.4 88 64.8
Sed0010516 Sechium edule HOM05D004461 ORTHO05D005543 1.2e-18 97.1 71 69.0
Atru.chr4.1475 Acer truncatum HOM05D004461 ORTHO05D005543 1.6e-18 96.7 74 67.6
CsaV3_4G032510 Cucumis sativus L. HOM05D004461 ORTHO05D005543 2.1e-18 96.3 88 63.6
Duzib268G0878 Durio zibethinus HOM05D004461 ORTHO05D005543 2.1e-18 96.3 74 67.6
FAN26G3123 Fragaria x ananassa HOM05D004461 ORTHO05D005543 2.7e-18 95.9 76 63.2
Gohir.A09G213618 Gossypium hirsutum HOM05D004461 ORTHO05D005543 2.7e-18 95.9 74 68.9
QL10p057561 Quercus lobata HOM05D004461 ORTHO05D005543 3.5e-18 95.5 83 63.9
Solyc08g044400.3 Solanum lycopersicum HOM05D004461 ORTHO05D005543 3.5e-18 95.5 74 64.9
Haze_00857 Corylus avellana HOM05D004461 ORTHO05D005543 4.6e-18 95.1 67 70.1
FvH4_1g00530 Fragaria vesca HOM05D004461 ORTHO05D005543 4.6e-18 95.1 76 63.2
FAN28G0648 Fragaria x ananassa HOM05D004461 ORTHO05D005543 4.6e-18 95.1 76 63.2
Prupe.7G266700 Prunus persica HOM05D004461 ORTHO05D005543 4.6e-18 95.1 74 63.5
Atru.chr4.1504 Acer truncatum HOM05D004461 ORTHO05D005543 6.0e-18 94.7 67 70.1
MELO3C026365.2 Cucumis melo HOM05D004461 ORTHO05D005543 6.0e-18 94.7 88 62.5
Dinv33221 Davidia involucrata HOM05D004461 ORTHO05D005543 7.9e-18 94.4 74 66.2
FAN23G0135 Fragaria x ananassa HOM05D004461 ORTHO05D005543 7.9e-18 94.4 76 61.8
Gorai.006G232600 Gossypium raimondii HOM05D004461 ORTHO05D005543 7.9e-18 94.4 74 67.6
PSO675G1807 Papaver somniferum HOM05D004461 ORTHO05D005543 7.9e-18 94.4 74 64.9
Cc03_g14480 Coffea canephora HOM05D004461 ORTHO05D005543 1.0e-17 94.0 74 66.2
Glyma.07G206500 Glycine max HOM05D004461 ORTHO05D005543 1.3e-17 93.6 74 63.5
Manes.05G186753 Manihot esculenta HOM05D004461 ORTHO05D005543 1.3e-17 93.6 74 67.6
Sopen08g013610 Solanum pennellii HOM05D004461 ORTHO05D005543 1.3e-17 93.6 74 63.5
TWI75G0299 Tripterygium wilfordii HOM05D004461 ORTHO05D005543 1.3e-17 93.6 74 64.9
Gohir.D09G212800 Gossypium hirsutum HOM05D004461 ORTHO05D005543 1.8e-17 93.2 74 66.2
Cpa.g.sc343.6 Carica papaya HOM05D004461 ORTHO05D005543 2.3e-17 92.8 65 67.7
Nn1g03495 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.3e-17 92.8 74 64.9
RcHm_v2.0_Chr2g0085161 Rosa chinensis HOM05D004461 ORTHO05D005543 2.3e-17 92.8 74 63.5
CANSAT56G3181 Cannabis sativa HOM05D004461 ORTHO05D005543 3.0e-17 92.4 74 64.9
Glyma.02G138500 Glycine max HOM05D004461 ORTHO05D005543 3.0e-17 92.4 74 63.5
Lalb_Chr16g0384381 Lupinus albus HOM05D004461 ORTHO05D005543 3.0e-17 92.4 74 63.5
Nitab4.5_0002660g0040 Nicotiana tabacum HOM05D004461 ORTHO05D005543 3.0e-17 92.4 79 60.8
CAN.G1190.30 Capsicum annuum HOM05D004461 ORTHO05D005543 3.9e-17 92.0 74 63.5
Gohir.D02G008532 Gossypium hirsutum HOM05D004461 ORTHO05D005543 3.9e-17 92.0 67 67.2
Gorai.005G010100 Gossypium raimondii HOM05D004461 ORTHO05D005543 3.9e-17 92.0 67 67.2
MD15G1148100 Malus domestica HOM05D004461 ORTHO05D005543 3.9e-17 92.0 74 62.2
CSS0004381 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 5.1e-17 91.7 76 64.5
MD02G1004400 Malus domestica HOM05D004461 ORTHO05D005543 5.1e-17 91.7 74 60.8
Potri.013G128500 Populus trichocarpa HOM05D004461 ORTHO05D005543 5.1e-17 91.7 74 64.9
Sed0020878 Sechium edule HOM05D004461 ORTHO05D005543 5.1e-17 91.7 71 66.2
GSVIVG01038186001 Vitis vinifera HOM05D004461 ORTHO05D005543 5.1e-17 91.7 73 64.4
MSTRG.9726 Avicennia marina HOM05D004461 ORTHO05D005543 6.7e-17 91.3 74 62.2
Thecc.04G163000 Theobroma cacao HOM05D004461 ORTHO05D005543 1.9e-16 89.7 83 62.7
VMungo0251G2958 Vigna mungo HOM05D004461 ORTHO05D005543 1.9e-16 89.7 74 62.2
Migut.A00584 Erythranthe guttata HOM05D004461 ORTHO05D005543 2.5e-16 89.4 74 60.8
Sabra13G0107300 Salix brachista HOM05D004461 ORTHO05D005543 2.5e-16 89.4 74 63.5
Gohir.A02G008301 Gossypium hirsutum HOM05D004461 ORTHO05D005543 3.3e-16 89.0 67 65.7
Phvul.003G059900 Phaseolus vulgaris HOM05D004461 ORTHO05D005543 4.3e-16 88.6 73 63.0
Sc25g0002880 Simmondsia chinensis HOM05D004461 ORTHO05D005543 4.3e-16 88.6 74 59.5
ECA248G0881 Erigeron canadensis HOM05D004461 ORTHO05D005543 5.7e-16 88.2 74 59.5
HanXRQChr01g0023421 Helianthus annuus HOM05D004461 ORTHO05D005543 5.7e-16 88.2 74 60.8
Peaxi162Scf00883g00910 Petunia axillaris HOM05D004461 ORTHO05D005543 7.4e-16 87.8 74 60.8
PGR042G2498 Punica granatum HOM05D004461 ORTHO05D005543 7.4e-16 87.8 74 63.5
SalBow1G4521 Salvia bowleyana HOM05D004461 ORTHO05D005543 7.4e-16 87.8 74 60.8
PSO541G3578 Papaver somniferum HOM05D004461 ORTHO05D005543 9.7e-16 87.4 74 62.2
SalBow1G6497 Salvia bowleyana HOM05D004461 ORTHO05D005543 9.7e-16 87.4 74 59.5
Aqoxy1G02097 Aquilegia oxysepala HOM05D004461 ORTHO05D005543 1.6e-15 86.7 74 62.2
arahy.Tifrunner.gnm1.ann1.XYX0FU Arachis hypogaea HOM05D004461 ORTHO05D005543 1.6e-15 86.7 107 47.7
Lsat_1_v5_gn_7_77561 Lactuca sativa HOM05D004461 ORTHO05D005543 2.2e-15 86.3 75 61.3
EL10Ac3g06109 Beta vulgaris HOM05D004461 ORTHO05D005543 2.8e-15 85.9 75 57.3
Eucgr.L00012 Eucalyptus grandis HOM05D004461 ORTHO05D005543 2.8e-15 85.9 74 60.8
Lju470C15G3 Lonicera japonica HOM05D004461 ORTHO05D005543 2.8e-15 85.9 69 63.8
Nn1g07161 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.8e-15 85.9 74 59.5
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.7e-15 85.5 107 47.7
TAR623G0001 Trochodendron aralioides HOM05D004461 ORTHO05D005543 3.7e-15 85.5 74 62.2
Medtr4g087530 Medicago truncatula HOM05D004461 ORTHO05D005543 4.8e-15 85.1 74 60.8
Lj4g0007039 Lotus japonicus HOM05D004461 ORTHO05D005543 6.3e-15 84.7 74 58.1
Nitab4.5_0000474g0020 Nicotiana tabacum HOM05D004461 ORTHO05D005543 1.1e-14 84.0 68 63.2
BcaB02g07448 Brassica carinata HOM05D004461 ORTHO05D005543 1.4e-14 83.6 74 58.1
AUR62002415 Chenopodium quinoa HOM05D004461 ORTHO05D005543 2.4e-14 82.8 74 56.8
Ca_18625_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 2.4e-14 82.8 74 58.1
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 2.4e-14 82.8 74 58.1
BcaC07g40502 Brassica carinata HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
BcaC08g45004 Brassica carinata HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
A07p24810 Brassica napus HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
A09p52040 Brassica napus HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
C06p26390 Brassica napus HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
C08p34720 Brassica napus HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
BolC6t37801H Brassica oleracea HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
BolC8t51074H Brassica oleracea HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
BraA07t30125Z Brassica rapa HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
Carub.0005s2648 Capsella rubella HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 59.5
CDE04G2300 Ceratophyllum demersum HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
Psat7g119400 Pisum sativum HOM05D004461 ORTHO05D005543 3.1e-14 82.4 74 58.1
Ah.13g073400 Amaranthus hybridus HOM05D004461 ORTHO05D005543 4.1e-14 82.0 65 63.1
ATR0796G101 Amborella trichopoda HOM05D004461 ORTHO05D005543 4.1e-14 82.0 74 56.8
AL5G41810 Arabidopsis lyrata HOM05D004461 ORTHO05D005543 4.1e-14 82.0 74 58.1
AT3G59770 Arabidopsis thaliana HOM05D004461 ORTHO05D005543 4.1e-14 82.0 74 59.5
Sp5g03430 Schrenkiella parvula HOM05D004461 ORTHO05D005543 4.1e-14 82.0 74 58.1
BraA09t40637Z Brassica rapa HOM05D004461 ORTHO05D005543 5.3e-14 81.6 74 56.8
AUR62023774 Chenopodium quinoa HOM05D004461 ORTHO05D005543 5.3e-14 81.6 74 56.8
Hund22530 Selenicereus undatus HOM05D004461 ORTHO05D005543 5.3e-14 81.6 74 56.8
HPP92_017806 Vanilla planifolia HOM05D004461 ORTHO05D005543 5.3e-14 81.6 74 59.5
ECA233G2329 Erigeron canadensis HOM05D004461 ORTHO05D005543 9.0e-14 80.9 74 56.8
unitig_736.g22475 Utricularia gibba HOM05D004461 ORTHO05D005543 1.2e-13 80.5 74 56.8
BcaC07g40444 Brassica carinata HOM05D004461 ORTHO05D005543 1.5e-13 80.1 74 56.8
Thhalv10005739m.g Eutrema salsugineum HOM05D004461 ORTHO05D005543 1.5e-13 80.1 74 58.1
THA.LOC104802333 Tarenaya hassleriana HOM05D004461 ORTHO05D005543 1.5e-13 80.1 115 44.3
CARHR170110 Cardamine hirsuta HOM05D004461 ORTHO05D005543 2.6e-13 79.3 83 55.4
Aa31LG10G14020 Aethionema arabicum HOM05D004461 ORTHO05D005543 5.9e-13 78.2 93 54.8
HanXRQChr04g0109651 Helianthus annuus HOM05D004461 ORTHO05D005543 7.7e-13 77.8 75 54.7
Zm00001eb208570 Zea mays HOM05D004461 ORTHO05D005543 1.3e-12 77.0 74 56.8
Os01g0355600 Oryza sativa ssp. japonica HOM05D004461 ORTHO05D005543 5.0e-12 75.1 72 55.6
SEGI_12893 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 5.0e-12 75.1 85 51.8
Lsat_1_v5_gn_3_101581 Lactuca sativa HOM05D004461 ORTHO05D029960 6.1e-10 68.2 78 44.9
Lsat_1_v5_gn_1_74200 Lactuca sativa HOM05D004461 ORTHO05D005543 8.8e-09 64.3 54 59.3
Lsat_1_v5_gn_2_119641 Lactuca sativa HOM05D004461 ORTHO05D029960 2.0e-08 63.2 70 47.1
Pp3c2_24100 Physcomitrium patens HOM05D004461 ORTHO05D005543 2.5e-08 62.8 78 43.6
MBI11_g07551_MAGBIO Magnolia biondii HOM05D004461 ORTHO05D005543 4.3e-08 62.0 53 58.5
SGA_v2.0_scaffold90G27634 Striga asiatica HOM05D004461 ORTHO05D005543 4.3e-08 62.0 51 58.8
SGA_v2.0_scaffold96G29048 Striga asiatica HOM05D004461 ORTHO05D005543 4.3e-08 62.0 51 58.8
TAR624G0560 Trochodendron aralioides HOM05D004461 ORTHO05D005543 2.2e-07 59.7 52 59.6
Sabra19G0110100 Salix brachista HOM05D002050 ORTHO05D001949 9.1e-06 54.3 39 66.7


User provided reference genes

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