Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 2.9e-122 441.8 211 100.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 4.8e-56 221.9 166 68.1
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 6.9e-55 218.0 151 70.2
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 3.4e-54 215.7 166 64.5
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 3.8e-53 212.2 166 63.9
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.5e-53 211.5 165 65.5
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 6.5e-53 211.5 166 66.3
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.4e-52 210.3 168 64.3
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 4.2e-52 208.8 159 66.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 4.2e-52 208.8 166 65.1
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 5.5e-52 208.4 174 60.9
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 5.5e-52 208.4 161 65.8
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 7.1e-52 208.0 147 70.1
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 9.3e-52 207.6 144 69.4
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.6e-51 206.8 144 68.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.7e-51 206.1 148 68.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 4.6e-51 205.3 149 64.4
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 4.6e-51 205.3 143 70.6
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 6.0e-51 204.9 147 68.7
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.9e-51 204.5 140 70.7
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.0e-50 204.1 166 62.7
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.0e-50 204.1 166 62.7
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.0e-50 204.1 166 62.0
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.3e-50 203.8 148 68.2
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.8e-50 203.4 150 64.0
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.8e-50 203.4 150 64.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.8e-50 203.4 162 64.2
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.3e-50 203.0 145 67.6
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.3e-50 203.0 148 68.2
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 3.0e-50 202.6 147 68.0
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 3.9e-50 202.2 166 63.9
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 5.1e-50 201.8 148 67.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 5.1e-50 201.8 179 60.3
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 6.7e-50 201.4 148 66.9
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 8.7e-50 201.1 160 62.5
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 8.7e-50 201.1 170 62.4
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.1e-49 200.7 145 66.9
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.5e-49 200.3 141 69.5
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.9e-49 199.9 144 67.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.9e-49 199.9 166 63.3
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 2.5e-49 199.5 165 61.8
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 2.5e-49 199.5 145 66.9
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.5e-49 199.5 160 63.8
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.5e-49 199.5 160 62.5
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 3.3e-49 199.1 152 65.1
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 4.3e-49 198.7 145 65.5
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 4.3e-49 198.7 166 62.0
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.3e-49 198.7 177 58.8
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 5.7e-49 198.4 148 66.2
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 5.7e-49 198.4 148 66.2
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 5.7e-49 198.4 152 65.1
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 5.7e-49 198.4 147 66.0
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 5.7e-49 198.4 166 63.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 7.4e-49 198.0 156 64.1
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 7.4e-49 198.0 133 72.2
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 7.4e-49 198.0 148 66.2
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 7.4e-49 198.0 148 65.5
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 7.4e-49 198.0 171 59.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 7.4e-49 198.0 148 66.9
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 9.6e-49 197.6 176 60.8
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 9.6e-49 197.6 160 64.4
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.1e-48 196.4 145 66.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.8e-48 196.1 148 66.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.7e-48 195.7 148 64.9
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 3.7e-48 195.7 209 54.1
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 3.7e-48 195.7 172 60.5
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 4.8e-48 195.3 145 66.9
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 4.8e-48 195.3 147 66.7
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 4.8e-48 195.3 148 64.9
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 6.2e-48 194.9 167 61.1
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 2.4e-47 193.0 145 65.5
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 4.1e-47 192.2 177 56.5
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.2e-46 190.7 174 57.5
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.5e-46 190.3 164 56.7
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 2.6e-46 189.5 145 63.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.4e-46 189.1 145 64.1
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 7.6e-46 188.0 145 61.4
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.3e-45 187.2 126 67.5
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.3e-45 187.2 145 62.8
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.7e-45 186.8 222 49.1
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 3.8e-45 185.7 111 76.6
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.5e-45 184.9 129 69.8
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 6.5e-45 184.9 174 56.3
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 8.4e-45 184.5 164 56.1
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 8.4e-45 184.5 164 56.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 6.1e-43 178.3 160 60.6
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.8e-42 176.8 142 59.9
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.9e-42 175.6 122 70.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-41 174.1 166 56.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 1.5e-41 173.7 165 54.5
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 4.3e-41 172.2 122 69.7
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.4e-41 171.4 165 58.2
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.6e-40 170.2 142 55.6
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 6.3e-40 168.3 208 48.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-39 167.5 113 70.8
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 2.4e-39 166.4 122 66.4
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.1e-39 165.6 145 55.9
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 9.0e-39 164.5 113 66.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.2e-38 164.1 139 54.7
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.4e-38 162.5 122 65.6
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 2.9e-37 159.5 111 66.7
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.9e-37 159.5 202 46.5
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.9e-37 159.5 202 46.5
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 2.9e-37 159.5 129 56.6
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 2.9e-37 159.5 177 50.8
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.8e-37 159.1 148 56.1
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.4e-36 157.1 143 55.9
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.9e-36 156.8 168 53.0
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 4.6e-35 152.1 146 52.7
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 3.0e-34 149.4 176 48.9
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.3e-33 145.6 117 58.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 9.7e-33 144.4 148 52.7
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 3.1e-31 139.4 87 71.3
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.3e-29 134.0 100 65.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.7e-29 133.7 98 66.3
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.9e-29 132.9 98 66.3
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 4.2e-28 129.0 99 63.6
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 4.2e-28 129.0 121 55.4
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.2e-28 129.0 121 55.4
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 5.5e-28 128.6 82 69.5
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.1e-27 126.7 145 42.8
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 2.6e-25 119.8 72 76.4
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.6e-25 119.8 106 54.7
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 7.4e-25 118.2 72 75.0
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 4.8e-24 115.5 72 73.6
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.4e-23 113.2 77 62.3
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 3.1e-23 112.8 85 64.7
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 9.1e-23 111.3 147 42.9
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-22 110.5 67 74.6
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.6e-22 109.8 110 48.2
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.0e-21 105.5 84 59.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-18 97.4 93 50.5
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 8.8e-18 94.7 55 76.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.4e-17 92.4 61 67.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 1.0e-13 81.3 83 48.2
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.7e-13 80.5 115 42.6
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 3.8e-13 79.3 70 55.7
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 5.2e-10 68.9 71 52.1
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.4e-09 66.2 67 50.7
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 5.9e-06 55.5 42 61.9


User provided reference genes

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