Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25717 Sapria himalayana HOM05D003862 ORTHO05D004398 1.2e-28 129.0 62 100.0
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.7e-09 65.5 61 52.5
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 2.9e-09 64.7 61 50.8
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 49.2
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 49.2
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 49.2
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 52.5
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 52.5
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 3.7e-09 64.3 61 52.5
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 4.9e-09 63.9 61 50.8
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 4.9e-09 63.9 61 50.8
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 4.9e-09 63.9 61 50.8
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 8.3e-09 63.2 61 50.8
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 8.3e-09 63.2 61 50.8
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 8.3e-09 63.2 61 52.5
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 8.3e-09 63.2 61 50.8
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 8.3e-09 63.2 61 50.8
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 49.2
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 52.5
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 49.2
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 49.2
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 49.2
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 49.2
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 52.5
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.1e-08 62.8 61 50.8
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 1.4e-08 62.4 61 50.8
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.4e-08 62.4 61 50.8
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 1.4e-08 62.4 61 49.2
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 1.4e-08 62.4 61 52.5
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 1.4e-08 62.4 61 49.2
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.9e-08 62.0 61 49.2
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.9e-08 62.0 61 49.2
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 2.4e-08 61.6 61 49.2
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.4e-08 61.6 61 50.8
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 3.2e-08 61.2 61 49.2
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 3.2e-08 61.2 61 52.5
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 3.2e-08 61.2 61 52.5
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 3.2e-08 61.2 61 50.8
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 3.2e-08 61.2 61 49.2
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 49.2
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 49.2
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 50.8
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 47.5
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 50.8
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 4.1e-08 60.8 61 50.8
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 50.8
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 4.1e-08 60.8 61 49.2
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 5.4e-08 60.5 61 49.2
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 5.4e-08 60.5 61 47.5
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 5.4e-08 60.5 61 50.8
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 50.8
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 47.5
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 47.5
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 49.2
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 49.2
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 49.2
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 47.5
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 7.1e-08 60.1 61 50.8
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 47.5
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 47.5
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 47.5
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 47.5
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 47.5
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 9.2e-08 59.7 61 49.2
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.2e-07 59.3 61 47.5
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 1.2e-07 59.3 61 47.5
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 1.2e-07 59.3 61 45.9
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 1.2e-07 59.3 61 49.2
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.2e-07 59.3 61 47.5
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 1.6e-07 58.9 61 49.2
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 1.6e-07 58.9 61 47.5
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 1.6e-07 58.9 61 49.2
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.6e-07 58.9 61 47.5
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.6e-07 58.9 61 47.5
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 2.1e-07 58.5 61 47.5
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 2.1e-07 58.5 59 47.5
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 3.5e-07 57.8 61 49.2
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 49.2
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 49.2
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 49.2
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 49.2
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 49.2
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 47.5
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 4.6e-07 57.4 61 45.9
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 6.0e-07 57.0 61 45.9
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 6.0e-07 57.0 62 50.0
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 7.8e-07 56.6 61 47.5
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 7.8e-07 56.6 61 47.5
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 7.8e-07 56.6 61 47.5
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 45.9
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 45.9
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 45.9
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 47.5
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 1.0e-06 56.2 53 52.8
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 44.3
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 44.3
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 1.0e-06 56.2 61 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 1.3e-06 55.8 52 55.8
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 1.3e-06 55.8 61 44.3
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-06 55.5 61 44.3
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-06 55.5 61 44.3
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-06 55.5 61 44.3
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 1.7e-06 55.5 61 45.9
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 2.3e-06 55.1 61 44.3
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 2.3e-06 55.1 61 45.9
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 2.3e-06 55.1 62 48.4
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 3.0e-06 54.7 61 47.5
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 3.0e-06 54.7 61 47.5
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 3.0e-06 54.7 61 44.3
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 3.0e-06 54.7 61 42.6
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 47.5
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 47.5
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 47.5
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 47.5
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 47.5
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 3.9e-06 54.3 61 42.6
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 5.1e-06 53.9 61 44.3
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 5.1e-06 53.9 53 52.8
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 5.1e-06 53.9 53 50.9
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 6.6e-06 53.5 61 41.0
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 8.6e-06 53.1 61 41.0
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 8.6e-06 53.1 61 41.0
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 8.6e-06 53.1 52 53.8


User provided reference genes

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