Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 6.2e-120 434.1 213 100.0
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.7e-35 152.9 191 50.8
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.8e-34 150.2 174 53.4
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 2.3e-34 149.8 195 48.2
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 3.0e-34 149.4 194 47.4
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 6.8e-34 148.3 191 48.2
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 2.0e-33 146.7 189 48.1
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 4.4e-33 145.6 189 48.1
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 5.7e-33 145.2 181 49.7
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 7.5e-33 144.8 194 47.4
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 7.5e-33 144.8 194 47.4
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.7e-32 143.7 189 48.1
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 6.3e-32 141.7 195 47.2
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 8.3e-32 141.4 222 41.4
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.1e-31 141.0 172 49.4
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.8e-31 140.2 215 40.9
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.4e-31 139.8 188 48.4
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 2.4e-31 139.8 192 45.8
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 3.1e-31 139.4 164 54.3
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 4.1e-31 139.0 191 44.5
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 5.4e-31 138.7 189 46.6
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 5.4e-31 138.7 189 46.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 5.4e-31 138.7 177 47.5
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 7.0e-31 138.3 162 52.5
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 7.0e-31 138.3 185 44.3
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 9.2e-31 137.9 191 46.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.2e-30 137.5 189 45.0
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.6e-30 137.1 189 46.0
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.0e-30 136.7 180 47.8
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.7e-30 136.3 184 46.7
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.5e-30 136.0 180 46.7
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 4.5e-30 135.6 188 46.8
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 4.5e-30 135.6 189 48.7
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.0e-29 134.4 173 47.4
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.3e-29 134.0 192 45.8
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.3e-29 134.0 191 44.5
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 2.3e-29 133.3 191 47.1
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.9e-29 132.9 180 47.2
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 3.8e-29 132.5 188 43.1
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 5.0e-29 132.1 173 46.2
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 5.0e-29 132.1 154 52.6
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 6.6e-29 131.7 189 46.0
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 8.6e-29 131.3 185 47.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 8.6e-29 131.3 185 47.0
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.1e-28 131.0 163 49.7
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.1e-28 131.0 166 50.6
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.1e-28 131.0 166 50.6
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.1e-28 131.0 180 46.7
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.1e-28 131.0 161 49.1
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.9e-28 130.2 183 43.7
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.5e-28 129.8 164 47.0
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.5e-28 129.8 193 43.0
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 3.3e-28 129.4 173 49.7
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.3e-28 129.4 191 45.0
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.3e-28 129.0 194 44.8
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 5.6e-28 128.6 161 48.4
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 7.3e-28 128.3 147 51.7
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 9.5e-28 127.9 201 42.8
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 9.5e-28 127.9 172 48.3
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 1.6e-27 127.1 177 42.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.6e-27 127.1 173 48.0
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.6e-27 127.1 194 44.3
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.6e-27 127.1 194 44.3
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 2.1e-27 126.7 154 46.8
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 2.1e-27 126.7 175 45.7
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.1e-27 126.7 184 44.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 2.1e-27 126.7 184 44.0
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 2.1e-27 126.7 173 43.9
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.6e-27 125.9 157 45.9
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 3.6e-27 125.9 185 41.6
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.7e-27 125.6 162 46.3
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 4.7e-27 125.6 165 47.3
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 4.7e-27 125.6 184 44.0
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.7e-27 125.6 174 49.4
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 1.0e-26 124.4 182 44.5
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.0e-26 124.4 177 47.5
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 2.3e-26 123.2 166 46.4
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 5.2e-26 122.1 162 47.5
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 5.2e-26 122.1 162 47.5
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 5.2e-26 122.1 159 47.8
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 2.0e-25 120.2 166 44.0
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 3.4e-25 119.4 171 41.5
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 3.4e-25 119.4 173 47.4
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 2.9e-24 116.3 148 49.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 4.9e-24 115.5 184 41.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 6.4e-24 115.2 172 43.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 8.3e-24 114.8 188 41.0
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 8.3e-24 114.8 175 44.0
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.1e-23 114.4 185 40.0
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 1.8e-23 113.6 143 46.2
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.8e-23 113.6 93 60.2
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.4e-23 113.2 162 45.7
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.4e-23 113.2 162 45.7
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.4e-23 113.2 88 61.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.2e-23 112.8 179 41.9
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 7.0e-23 111.7 162 45.1
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.2e-23 111.3 159 44.0
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.2e-22 110.9 184 40.8
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 3.5e-22 109.4 168 41.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 3.5e-22 109.4 167 38.9
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 3.5e-22 109.4 108 50.0
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 2.3e-21 106.7 197 38.6
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 8.6e-21 104.8 69 69.6
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 3.3e-20 102.8 167 41.9
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 5.6e-20 102.1 81 58.0
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 5.6e-20 102.1 177 40.1
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.6e-17 93.2 81 54.3
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 9.2e-15 84.7 183 34.4
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.6e-14 84.0 62 59.7
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.9e-13 79.3 67 56.7
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 6.8e-10 68.6 66 50.0


User provided reference genes

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