Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25676 Sapria himalayana HOM05D000533 ORTHO05D001069 5.3e-220 767.3 368 100.0
A04p09590 Brassica napus HOM05D000533 ORTHO05D001069 1.1e-44 184.9 226 47.8
BolSC28t60427H Brassica oleracea HOM05D000533 ORTHO05D001069 3.3e-44 183.3 230 47.0
C01p34660 Brassica napus HOM05D000533 ORTHO05D001069 4.7e-43 179.5 230 46.1
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 4.2e-39 166.4 283 41.0
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 1.1e-36 158.3 289 39.1
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 4.9e-32 142.9 263 35.7
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 6.4e-32 142.5 263 35.0
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 8.7e-29 132.1 448 27.5
BolSC28t60325H Brassica oleracea HOM05D000533 ORTHO05D001069 1.6e-27 127.9 195 41.0
BraSC159t45715Z Brassica rapa HOM05D000533 ORTHO05D001069 1.6e-27 127.9 195 41.0
DCAR_032449 Daucus carota HOM05D000533 ORTHO05D001069 3.6e-27 126.7 246 35.8
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 1.8e-26 124.4 245 35.1
GSVIVG01004958001 Vitis vinifera HOM05D000533 ORTHO05D001069 4.5e-25 119.8 230 38.7
Aa31csc1081G30 Aethionema arabicum HOM05D000533 ORTHO05D001069 9.9e-25 118.6 243 36.6
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 1.7e-24 117.9 489 25.6
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 3.8e-24 116.7 264 33.7
Solyc00g500184.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.8e-24 116.7 229 35.8
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 1.4e-23 114.8 246 33.7
CAN.G267.14 Capsicum annuum HOM05D000533 ORTHO05D001069 3.2e-23 113.6 245 34.3
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 4.2e-23 113.2 266 35.0
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 4.2e-23 113.2 266 35.0
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 1.6e-22 111.3 245 33.1
SabraMtG0006600 Salix brachista HOM05D000533 ORTHO05D001069 1.6e-22 111.3 151 45.7
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 2.1e-22 110.9 245 33.1
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 2.1e-22 110.9 245 33.1
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 2.7e-22 110.5 245 33.1
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-21 108.2 245 31.8
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.3e-21 108.2 245 31.8
CAN.G1.13 Capsicum annuum HOM05D000533 ORTHO05D001069 4.8e-19 99.8 234 31.6
GSVIVG01006222001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.1e-18 98.6 160 38.8
Glyma.15G188000 Glycine max HOM05D000533 ORTHO05D001069 1.8e-18 97.8 55 81.8
Solyc12g036590.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.0e-18 95.5 59 72.9
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 1.2e-17 95.1 62 71.0
CAN.G4.19 Capsicum annuum HOM05D000533 ORTHO05D001069 1.5e-17 94.7 55 78.2
Cpa.g.sc200.35 Carica papaya HOM05D000533 ORTHO05D001069 1.5e-17 94.7 55 80.0
Glyma.15G187666 Glycine max HOM05D000533 ORTHO05D001069 1.5e-17 94.7 55 80.0
Ah.10g028350 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Aqoxy3G01139 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.0LI3ZC Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.1S94M9 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.C1VVMY Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.PQN9HV Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.VAXL0Q Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.WRNL5Y Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
arahy.Tifrunner.gnm1.ann1.WT8VJC Arachis hypogaea HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Cfa023036 Carpinus fangiana HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
AUR62043914 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
HanXRQChr04g0109061 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
HanXRQChr14g0434361 Helianthus annuus HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Lsat_1_v5_gn_4_123980 Lactuca sativa HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Lsat_1_v5_gn_5_152661 Lactuca sativa HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Lsat_1_v5_gn_7_25900 Lactuca sativa HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Lalb_Chr00c24g0407281 Lupinus albus HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
GSVIVG01006220001 Vitis vinifera HOM05D000533 ORTHO05D001069 2.6e-17 94.0 55 78.2
Aqoxy4G01612 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 3.4e-17 93.6 55 78.2
Peaxi162Scf00197g00026 Petunia axillaris HOM05D000533 ORTHO05D001069 3.4e-17 93.6 81 61.7
Solyc00g500185.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.4e-17 93.6 81 61.7
Nitab4.5_0001153g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.5e-17 93.2 55 76.4
Lsat_1_v5_gn_7_67821 Lactuca sativa HOM05D000533 ORTHO05D001069 7.6e-17 92.4 120 45.8
Actinidia34826 Actinidia chinensis HOM05D000533 ORTHO05D001069 1.3e-16 91.7 56 78.6
MSTRG.26041 Avicennia marina HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
CAN.G1632.17 Capsicum annuum HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
Lsat_1_v5_gn_7_99760 Lactuca sativa HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
Peaxi162Scf03098g00003 Petunia axillaris HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
RhsimMtG0002000 Rhododendron simsii HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
Sopen05g012880 Solanum pennellii HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
unitig_87.g27982 Utricularia gibba HOM05D000533 ORTHO05D001069 1.3e-16 91.7 55 76.4
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.7e-16 91.3 55 72.7
Nitab4.5_0000172g0890 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.7e-16 91.3 57 71.9
Aqoxy7G01636 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.2e-16 90.9 55 74.5
Nitab4.5_0001152g0640 Nicotiana tabacum HOM05D010881 ORTHO05D014572 4.9e-16 89.7 121 44.6
SHI29300 Sapria himalayana HOM05D000533 ORTHO05D001069 4.9e-16 89.7 55 74.5
BraSC48t46305Z Brassica rapa HOM05D000533 ORTHO05D001069 6.4e-16 89.4 55 74.5
Oeu013777.2 Olea europaea HOM05D000533 ORTHO05D001069 6.4e-16 89.4 55 74.5
Nitab4.5_0008578g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-15 88.6 55 72.7
Nitab4.5_0001152g0630 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-15 88.2 226 30.1
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.9e-15 87.8 55 74.5
Sed0022170 Sechium edule HOM05D000533 ORTHO05D001069 1.9e-15 87.8 52 76.9
Nitab4.5_0008916g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.2e-15 87.0 56 71.4
Nitab4.5_0002418g0130 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.2e-15 86.7 52 76.9
SHI11894 Sapria himalayana HOM05D000533 ORTHO05D001069 4.2e-15 86.7 56 71.4
SHI52562 Sapria himalayana HOM05D000533 ORTHO05D001069 4.2e-15 86.7 55 72.7
Solyc01g065810.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 4.2e-15 86.7 55 70.9
SMO053G0001 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 5.5e-15 86.3 181 34.3
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 7.1e-15 85.9 167 32.3
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 1.2e-14 85.1 168 36.3
CsaV3_UNG208550 Cucumis sativus L. HOM05D000533 ORTHO05D001069 2.1e-14 84.3 81 55.6
Nitab4.5_0002287g0110 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.1e-14 84.3 56 69.6
Nitab4.5_0012067g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.7e-14 84.0 56 67.9
Ca_17160_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 4.6e-14 83.2 154 39.6
Ca_26706_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 4.6e-14 83.2 154 39.6
SEGI_08012 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 6.0e-14 82.8 55 69.1
Sopen05g012870 Solanum pennellii HOM05D000533 ORTHO05D001069 7.9e-14 82.4 55 72.7
CAN.G811.5 Capsicum annuum HOM05D000533 ORTHO05D001069 1.0e-13 82.0 56 67.9
Nitab4.5_0006806g0120 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.0e-13 82.0 105 46.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.3e-13 80.9 48 75.0
Nitab4.5_0006806g0150 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.0e-13 80.5 64 62.5
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 3.9e-13 80.1 51 70.6
Ca_26708_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 3.9e-13 80.1 51 70.6
Nitab4.5_0000623g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.9e-13 80.1 48 72.9
arahy.Tifrunner.gnm1.ann1.VVPQ8E Arachis hypogaea HOM05D000533 ORTHO05D001069 6.7e-13 79.3 70 57.1
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.7e-13 79.0 49 71.4
Cpa.g.sc263.15 Carica papaya HOM05D000533 ORTHO05D001069 1.1e-12 78.6 47 74.5
Thecc.08G163000 Theobroma cacao HOM05D000533 ORTHO05D001069 1.5e-12 78.2 48 70.8
C01p34650 Brassica napus HOM05D000533 ORTHO05D001069 1.9e-12 77.8 60 58.3
Nitab4.5_0008293g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.5e-12 77.4 58 58.6
SabraMtG0006500 Salix brachista HOM05D000533 ORTHO05D001069 5.6e-12 76.3 46 73.9
Sp3g25560 Schrenkiella parvula HOM05D000533 ORTHO05D001069 5.6e-12 76.3 46 73.9
SHI17974 Sapria himalayana HOM05D000533 ORTHO05D001069 9.6e-12 75.5 53 64.2
A04p09580 Brassica napus HOM05D000533 ORTHO05D001069 1.3e-11 75.1 53 64.2
BolSC28t60324H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-11 75.1 53 64.2
BolSC28t60426H Brassica oleracea HOM05D000533 ORTHO05D001069 1.3e-11 75.1 53 64.2
CDE02G3581 Ceratophyllum demersum HOM05D000533 ORTHO05D001069 1.6e-11 74.7 248 32.7
Nitab4.5_0009703g0090 Nicotiana tabacum HOM05D010881 ORTHO05D001069 2.8e-11 73.9 92 47.8
Nitab4.5_0012067g0080 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.8e-11 73.2 56 64.3
arahy.Tifrunner.gnm1.ann1.AMUJ6F Arachis hypogaea HOM05D000533 ORTHO05D001069 6.2e-11 72.8 32 93.8
RhsimMtG0002200 Rhododendron simsii HOM05D000533 ORTHO05D001069 6.2e-11 72.8 86 50.0
Sed0020382 Sechium edule HOM05D000533 ORTHO05D001069 1.1e-10 72.0 45 71.1
CsaV3_UNG208530 Cucumis sativus L. HOM05D000533 ORTHO05D001069 1.4e-10 71.6 48 68.8
CsaV3_6G025230 Cucumis sativus L. HOM05D000533 ORTHO05D001069 6.9e-10 69.3 54 61.1
CsaV3_6G025300 Cucumis sativus L. HOM05D000533 ORTHO05D001069 6.9e-10 69.3 54 61.1
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 9.0e-10 68.9 45 71.1
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 7.6e-09 65.9 171 30.4
Eucgr.I01851 Eucalyptus grandis HOM05D000533 ORTHO05D019810 7.6e-09 65.9 68 54.4
Peaxi162Scf00197g00048 Petunia axillaris HOM05D000533 ORTHO05D001069 1.0e-08 65.5 106 39.6
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 3.8e-08 63.5 55 54.5
Nitab4.5_0001649g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.4e-08 62.4 49 55.1
ClCG08G009690 Citrullus lanatus HOM05D000533 ORTHO05D001069 1.1e-07 62.0 38 71.1
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 1.1e-07 62.0 55 52.7
HanXRQChr04g0109051 Helianthus annuus HOM05D000533 ORTHO05D001069 1.1e-07 62.0 68 50.0
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 5.5e-07 59.7 55 50.9
Lsat_1_v5_gn_5_16221 Lactuca sativa HOM05D000533 ORTHO05D001069 9.3e-07 58.9 103 42.7
Ca_26704_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 2.1e-06 57.8 124 35.5
COL.COLO4_01459 Corchorus olitorius HOM05D000533 ORTHO05D001069 3.5e-06 57.0 55 50.9
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 7.9e-06 55.8 55 43.6


User provided reference genes

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