Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 5.5e-80 300.8 144 100.0
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-16 90.1 53 77.4
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.3e-16 89.0 125 40.8
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 7.3e-16 87.8 125 40.8
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.3e-15 87.0 56 71.4
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-15 87.0 125 39.2
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.6e-15 86.7 56 69.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.6e-15 86.7 51 76.5
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-15 86.3 56 69.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-15 86.3 56 69.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-15 86.3 56 69.6
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-15 86.3 56 69.6
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 2.1e-15 86.3 56 69.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.1e-15 86.3 51 76.5
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-15 86.3 51 76.5
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-15 86.3 51 76.5
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-15 86.3 51 76.5
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-15 86.3 51 76.5
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.1e-15 86.3 52 75.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.8e-15 85.9 77 57.1
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 3.6e-15 85.5 51 76.5
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-15 85.1 56 71.4
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 4.8e-15 85.1 51 74.5
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 8.1e-15 84.3 51 74.5
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 8.1e-15 84.3 51 74.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.1e-14 84.0 124 41.9
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.4e-14 83.6 51 72.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.8e-14 83.2 51 72.5
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.8e-14 83.2 51 72.5
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.4e-14 82.8 51 74.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.1e-14 82.4 51 72.5
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.1e-14 82.4 51 72.5
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 5.3e-14 81.6 56 67.9
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.9e-14 81.3 77 54.5
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 6.9e-14 81.3 150 36.7
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 9.0e-14 80.9 59 62.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 9.0e-14 80.9 51 72.5
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 9.0e-14 80.9 51 72.5
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 9.0e-14 80.9 51 72.5
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 9.0e-14 80.9 51 72.5
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.2e-13 80.5 51 72.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-13 80.5 124 41.1
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-13 80.5 124 41.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.5e-13 80.1 51 70.6
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.4e-13 79.0 51 68.6
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.4e-13 79.0 58 63.8
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.7e-12 76.6 51 68.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.7e-12 76.6 52 69.2
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-12 76.6 56 62.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.8e-12 75.5 51 68.6
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 8.4e-12 74.3 52 63.5
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 1.1e-08 63.9 43 69.8
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-08 63.9 40 67.5
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.3e-08 62.4 37 73.0
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.3e-08 62.4 53 56.6
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.3e-08 62.4 53 56.6
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 4.8e-07 58.5 45 64.4


User provided reference genes

Program Settings