Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25451 Sapria himalayana HOM05D001416 ORTHO05D005885 1.6e-31 141.0 66 100.0
SHI26839 Sapria himalayana HOM05D001416 ORTHO05D005885 2.2e-20 104.0 95 58.9
QL04p065252 Quercus lobata HOM05D001416 ORTHO05D005885 2.5e-19 100.5 72 68.1
MSTRG.22184 Avicennia marina HOM05D001416 ORTHO05D005885 1.2e-18 98.2 72 65.3
MSTRG.24421 Avicennia marina HOM05D001416 ORTHO05D005885 7.9e-18 95.5 72 63.9
MELO3C025124.2 Cucumis melo HOM05D001416 ORTHO05D005885 7.9e-18 95.5 72 65.3
CsaV3_5G024260 Cucumis sativus L. HOM05D001416 ORTHO05D005885 7.9e-18 95.5 72 65.3
Sed0016282 Sechium edule HOM05D001416 ORTHO05D005885 7.9e-18 95.5 72 65.3
Cfa004405 Carpinus fangiana HOM05D001416 ORTHO05D005885 2.3e-17 94.0 72 63.9
Potri.016G022800 Populus trichocarpa HOM05D001416 ORTHO05D005885 3.0e-17 93.6 72 63.9
SGA_v2.0_scaffold241G44207 Striga asiatica HOM05D001416 ORTHO05D005885 3.0e-17 93.6 72 62.5
CANSAT64G0854 Cannabis sativa HOM05D001416 ORTHO05D005885 3.9e-17 93.2 72 62.5
arahy.Tifrunner.gnm1.ann1.GM5FYT Arachis hypogaea HOM05D001416 ORTHO05D005885 5.1e-17 92.8 72 61.1
PSO541G1173 Papaver somniferum HOM05D001416 ORTHO05D005885 5.1e-17 92.8 72 61.1
Gohir.A11G060600 Gossypium hirsutum HOM05D001416 ORTHO05D005885 6.7e-17 92.4 72 61.1
Gohir.D11G064700 Gossypium hirsutum HOM05D001416 ORTHO05D005885 6.7e-17 92.4 72 61.1
Eucgr.K01330 Eucalyptus grandis HOM05D001416 ORTHO05D005885 8.8e-17 92.0 72 62.5
Gorai.007G069900 Gossypium raimondii HOM05D001416 ORTHO05D005885 8.8e-17 92.0 71 62.0
EL10Ac9g22888 Beta vulgaris HOM05D001416 ORTHO05D005885 1.1e-16 91.7 72 61.1
arahy.Tifrunner.gnm1.ann1.XQVZ33 Arachis hypogaea HOM05D001416 ORTHO05D005885 1.5e-16 91.3 70 61.4
Dinv12067 Davidia involucrata HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 61.1
Duzib147G1236 Durio zibethinus HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 61.1
Hma1.2p1_0583F.1_g182990 Hydrangea macrophylla HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 61.1
Lj7A380G30 Lonicera japonica HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 59.7
Sabra16G0023300 Salix brachista HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 61.1
Sabra16G0029000 Salix brachista HOM05D001416 ORTHO05D005885 2.0e-16 90.9 72 61.1
Ah.01g002080 Amaranthus hybridus HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 59.7
AUR62015181 Chenopodium quinoa HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 59.7
AUR62017636 Chenopodium quinoa HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 59.7
Migut.N02835 Erythranthe guttata HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 59.7
Migut.O00442 Erythranthe guttata HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 59.7
Sabra06G0017400 Salix brachista HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 62.5
Thecc.01G164400 Theobroma cacao HOM05D001416 ORTHO05D005885 2.5e-16 90.5 72 61.1
CAN.G1664.6 Capsicum annuum HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 59.7
ECA246G2229 Erigeron canadensis HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 59.7
Lsat_1_v5_gn_3_34641 Lactuca sativa HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 59.7
PGR004G0865 Punica granatum HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 62.5
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 61.1
TWI34G0068 Tripterygium wilfordii HOM05D001416 ORTHO05D005885 3.3e-16 90.1 72 59.7
CDE12G0887 Ceratophyllum demersum HOM05D001416 ORTHO05D005885 4.3e-16 89.7 71 60.6
DCAR_013330 Daucus carota HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 59.7
HanXRQChr06g0171681 Helianthus annuus HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 59.7
Lj6g0001258 Lotus japonicus HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 59.7
PSO675G7314 Papaver somniferum HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 59.7
Solyc12g006297.1 Solanum lycopersicum HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 58.3
Sopen12g002270 Solanum pennellii HOM05D001416 ORTHO05D005885 4.3e-16 89.7 72 58.3
CAN.G946.3 Capsicum annuum HOM05D001416 ORTHO05D005885 5.7e-16 89.4 72 58.3
RcHm_v2.0_Chr2g0154741 Rosa chinensis HOM05D001416 ORTHO05D005885 5.7e-16 89.4 72 59.7
SEGI_24758 Sequoiadendron giganteum HOM05D001416 ORTHO05D005885 5.7e-16 89.4 72 61.1
CiPaw.04G198500 Carya illinoinensis HOM05D001416 ORTHO05D005885 7.4e-16 89.0 72 59.7
Hund24325 Selenicereus undatus HOM05D001416 ORTHO05D005885 7.4e-16 89.0 72 58.3
Atru.chr8.946 Acer truncatum HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 58.3
CSS0038108 Camellia sinensis var. sinensis HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 58.3
Glyma.13G004100 Glycine max HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 58.3
Glyma.20G064700 Glycine max HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 58.3
MD09G1135200 Malus domestica HOM05D001416 ORTHO05D005885 9.7e-16 88.6 70 61.4
Phvul.006G002400 Phaseolus vulgaris HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 58.3
TAR627G0892 Trochodendron aralioides HOM05D001416 ORTHO05D005885 9.7e-16 88.6 72 59.7
Carub.0003s2246 Capsella rubella HOM05D001416 ORTHO05D005885 1.3e-15 88.2 72 58.3
Ca_16313_v3 Cicer arietinum L. HOM05D001416 ORTHO05D005885 1.3e-15 88.2 73 58.9
HanXRQChr17g0541131 Helianthus annuus HOM05D001416 ORTHO05D005885 1.3e-15 88.2 68 60.3
Prupe.3G191500 Prunus persica HOM05D001416 ORTHO05D005885 1.3e-15 88.2 72 58.3
THA.LOC104803020 Tarenaya hassleriana HOM05D001416 ORTHO05D005885 1.3e-15 88.2 72 58.3
BcaC01g03455 Brassica carinata HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 58.3
C03p52390 Brassica napus HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 58.3
BolC3t17511H Brassica oleracea HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 58.3
Cc05_g00610 Coffea canephora HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 58.3
Nn6g34844 Nelumbo nucifera HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 58.3
Psat5g106800 Pisum sativum HOM05D001416 ORTHO05D005885 1.7e-15 87.8 73 58.9
Solyc07g044810.3 Solanum lycopersicum HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 56.9
Sopen07g023370 Solanum pennellii HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 56.9
PGSC0003DMG401000927 Solanum tuberosum HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 56.9
TPR.G8269 Trifolium pratense HOM05D001416 ORTHO05D005885 1.7e-15 87.8 73 58.9
unitig_8.g4852 Utricularia gibba HOM05D001416 ORTHO05D005885 1.7e-15 87.8 72 56.9
ATR0749G007 Amborella trichopoda HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 56.9
CARHR098190 Cardamine hirsuta HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 58.3
FvH4_6g40110 Fragaria vesca HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 59.7
FAN05G2131 Fragaria x ananassa HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 59.7
FAN09G2802 Fragaria x ananassa HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 59.7
FAN14G0991 Fragaria x ananassa HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 59.7
Lalb_Chr17g0349371 Lupinus albus HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 58.3
MD17G1124200 Malus domestica HOM05D001416 ORTHO05D005885 2.2e-15 87.4 70 60.0
Medtr3g081480 Medicago truncatula HOM05D001416 ORTHO05D005885 2.2e-15 87.4 73 58.9
unitig_578.g16176 Utricularia gibba HOM05D001416 ORTHO05D005885 2.2e-15 87.4 72 56.9
Aa31LG8G8860 Aethionema arabicum HOM05D001416 ORTHO05D005885 2.8e-15 87.0 72 56.9
BcaB04g19196 Brassica carinata HOM05D001416 ORTHO05D005885 2.8e-15 87.0 72 56.9
FAN02G0523 Fragaria x ananassa HOM05D001416 ORTHO05D005885 2.8e-15 87.0 72 59.7
Nitab4.5_0006378g0020 Nicotiana tabacum HOM05D001416 ORTHO05D005885 2.8e-15 87.0 68 60.3
Nitab4.5_0008216g0010 Nicotiana tabacum HOM05D001416 ORTHO05D005885 2.8e-15 87.0 68 60.3
AL3G36560 Arabidopsis lyrata HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
BcaB06g26333 Brassica carinata HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
A03p42700 Brassica napus HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
BraA03t13417Z Brassica rapa HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
CSS0044062 Camellia sinensis var. sinensis HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
Ciclev10012850m.g Citrus clementina HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 58.3
Gorai.012G039800 Gossypium raimondii HOM05D001416 ORTHO05D005885 3.7e-15 86.7 70 58.6
Sp3g20080 Schrenkiella parvula HOM05D001416 ORTHO05D005885 3.7e-15 86.7 72 56.9
GSVIVG01000816001 Vitis vinifera HOM05D001416 ORTHO05D005885 3.7e-15 86.7 70 58.6
AT3G22290 Arabidopsis thaliana HOM05D001416 ORTHO05D005885 4.8e-15 86.3 72 56.9
Zm00001eb149510 Zea mays HOM05D001416 ORTHO05D005885 4.8e-15 86.3 70 57.1
A05p26480 Brassica napus HOM05D001416 ORTHO05D005885 6.3e-15 85.9 72 55.6
BraA05t21521Z Brassica rapa HOM05D001416 ORTHO05D005885 6.3e-15 85.9 72 55.6
Actinidia03332 Actinidia chinensis HOM05D001416 ORTHO05D005885 8.2e-15 85.5 72 59.7
Actinidia25735 Actinidia chinensis HOM05D001416 ORTHO05D005885 8.2e-15 85.5 72 59.7
Duzib264G0492 Durio zibethinus HOM05D001416 ORTHO05D005885 8.2e-15 85.5 72 56.9
Peaxi162Scf00351g00617 Petunia axillaris HOM05D001416 ORTHO05D005885 8.2e-15 85.5 79 53.2
Thhalv10021173m.g Eutrema salsugineum HOM05D001416 ORTHO05D005885 1.1e-14 85.1 72 55.6
Manes.09G002100 Manihot esculenta HOM05D001416 ORTHO05D005885 1.1e-14 85.1 74 60.8
Gohir.A05G380300 Gossypium hirsutum HOM05D001416 ORTHO05D005885 1.4e-14 84.7 70 57.1
THA.LOC104808532 Tarenaya hassleriana HOM05D001416 ORTHO05D005885 1.4e-14 84.7 72 55.6
BcaC05g28084 Brassica carinata HOM05D001416 ORTHO05D005885 2.4e-14 84.0 72 55.6
BolC5t32849H Brassica oleracea HOM05D001416 ORTHO05D005885 2.4e-14 84.0 72 55.6
C05p41070 Brassica napus HOM05D001416 ORTHO05D005885 5.3e-14 82.8 72 54.2
Haze_15001 Corylus avellana HOM05D001416 ORTHO05D005885 5.3e-14 82.8 101 45.5
TAR629G1473 Trochodendron aralioides HOM05D001416 ORTHO05D005885 5.3e-14 82.8 70 58.6
Zm00001eb368810 Zea mays HOM05D001416 ORTHO05D005885 6.9e-14 82.4 68 54.4
CDE11G0481 Ceratophyllum demersum HOM05D001416 ORTHO05D005885 9.1e-14 82.0 73 57.5
Os03g0784400 Oryza sativa ssp. japonica HOM05D001416 ORTHO05D005885 1.5e-13 81.3 73 54.8
ClCG01G008750 Citrullus lanatus HOM05D001416 ORTHO05D005885 2.6e-13 80.5 51 70.6
PGSC0003DMG400028828 Solanum tuberosum HOM05D001416 ORTHO05D005885 5.9e-13 79.3 51 68.6
SalBow2G0196 Salvia bowleyana HOM05D001416 ORTHO05D005885 1.7e-12 77.8 51 66.7
DCAR_009828 Daucus carota HOM05D001416 ORTHO05D005885 2.2e-12 77.4 51 66.7
Nitab4.5_0001843g0180 Nicotiana tabacum HOM05D001416 ORTHO05D005885 2.2e-12 77.4 51 66.7
Nitab4.5_0006724g0020 Nicotiana tabacum HOM05D001416 ORTHO05D005885 2.2e-12 77.4 51 66.7
Oeu011636.2 Olea europaea HOM05D001416 ORTHO05D005885 2.2e-12 77.4 51 68.6
Sc06g0004010 Simmondsia chinensis HOM05D001416 ORTHO05D005885 6.5e-12 75.9 51 66.7
Aqoxy1G01591 Aquilegia oxysepala HOM05D001416 ORTHO05D005885 1.4e-11 74.7 51 64.7
vmacro05093 Vaccinium macrocarpon HOM05D001416 ORTHO05D005885 2.5e-11 73.9 51 66.7
COL.COLO4_29914 Corchorus olitorius HOM05D001416 ORTHO05D005885 3.2e-11 73.6 51 62.7
SMO133G0020 Selaginella moellendorffii HOM05D001416 ORTHO05D005885 2.7e-10 70.5 70 48.6
Zm00001eb104240 Zea mays HOM05D001416 ORTHO05D005885 2.7e-10 70.5 49 61.2
Pp3c16_11750 Physcomitrium patens HOM05D001416 ORTHO05D005885 6.1e-10 69.3 68 50.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 6.1e-10 69.3 51 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4133 Anthoceros agrestis HOM05D001416 ORTHO05D005885 1.8e-09 67.8 69 46.4
Mapoly0014s0022 Marchantia polymorpha HOM05D001416 ORTHO05D005885 5.1e-09 66.2 68 45.6
CBR_g19615 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-08 63.2 71 45.1
CBR_g72627 Chara braunii HOM05D001416 ORTHO05D005885 1.3e-07 61.6 71 43.7
Migut.B00616 Erythranthe guttata HOM05D001416 ORTHO05D002549 2.2e-07 60.8 49 61.2
SalBow5G4751 Salvia bowleyana HOM05D001416 ORTHO05D002549 1.1e-06 58.5 73 46.6
QL05p034133 Quercus lobata HOM05D001416 ORTHO05D002549 1.8e-06 57.8 53 49.1
TWI59G1474 Tripterygium wilfordii HOM05D001416 ORTHO05D002549 3.1e-06 57.0 53 52.8
CBR_g18620 Chara braunii HOM05D001416 ORTHO05D002549 5.3e-06 56.2 73 43.8
SEGI_23830 Sequoiadendron giganteum HOM05D001416 ORTHO05D002549 5.3e-06 56.2 53 52.8
SGA_v2.0_scaffold83G26296 Striga asiatica HOM05D001416 ORTHO05D002549 5.3e-06 56.2 49 55.1
Dinv24199 Davidia involucrata HOM05D001416 ORTHO05D002549 7.0e-06 55.8 73 42.5
Hund26952 Selenicereus undatus HOM05D001416 ORTHO05D002549 9.1e-06 55.5 73 42.5
TAR376G0170 Trochodendron aralioides HOM05D001416 ORTHO05D002549 9.1e-06 55.5 52 50.0


User provided reference genes

Program Settings