Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 5.6e-195 684.1 347 100.0
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 4.4e-67 259.2 277 49.1
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-53 214.2 152 67.8
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 1.4e-52 211.1 152 66.4
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 4.0e-52 209.5 153 65.4
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 2.6e-51 206.8 149 65.8
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 5.8e-51 205.7 181 56.4
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 9.9e-51 204.9 152 65.8
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.3e-50 204.5 150 66.0
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.3e-50 204.5 150 67.3
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.7e-50 204.1 150 65.3
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.7e-50 204.1 153 63.4
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.9e-50 203.4 181 56.4
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 3.8e-50 203.0 150 65.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 3.8e-50 203.0 150 65.3
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 4.9e-50 202.6 150 64.7
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 4.9e-50 202.6 150 66.0
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 6.4e-50 202.2 150 64.7
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.4e-50 202.2 150 64.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 8.4e-50 201.8 155 63.9
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 8.4e-50 201.8 150 64.7
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 8.4e-50 201.8 150 64.7
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.1e-49 201.4 150 64.0
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.4e-49 201.1 150 64.0
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.9e-49 200.7 168 58.9
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 1.9e-49 200.7 194 53.1
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.9e-49 200.7 190 54.7
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 1.9e-49 200.7 150 64.7
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 2.4e-49 200.3 147 66.0
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 2.4e-49 200.3 152 64.5
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 2.4e-49 200.3 149 65.1
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 3.2e-49 199.9 150 64.7
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.2e-49 199.9 155 62.6
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 4.2e-49 199.5 152 62.5
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 4.2e-49 199.5 150 64.0
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 4.2e-49 199.5 151 61.6
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 4.2e-49 199.5 151 63.6
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 5.4e-49 199.1 151 63.6
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 9.3e-49 198.4 151 61.6
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 9.3e-49 198.4 152 63.8
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 9.3e-49 198.4 151 62.3
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.2e-48 198.0 150 64.0
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.2e-48 198.0 152 63.2
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.6e-48 197.6 150 64.0
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 1.6e-48 197.6 149 63.8
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 2.1e-48 197.2 152 64.5
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.1e-48 197.2 151 60.9
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 2.7e-48 196.8 150 64.0
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 2.7e-48 196.8 150 64.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.7e-48 196.8 153 62.7
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 2.7e-48 196.8 155 61.3
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 2.7e-48 196.8 151 61.6
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 2.7e-48 196.8 152 63.2
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 3.5e-48 196.4 155 61.3
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.5e-48 196.4 150 62.7
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 3.5e-48 196.4 151 62.9
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 3.5e-48 196.4 149 63.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 3.5e-48 196.4 149 63.8
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 3.5e-48 196.4 150 64.7
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 4.6e-48 196.1 150 62.7
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 4.6e-48 196.1 150 62.7
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 4.6e-48 196.1 149 63.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 4.6e-48 196.1 151 62.9
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 6.0e-48 195.7 153 62.7
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 6.0e-48 195.7 152 62.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 6.0e-48 195.7 150 63.3
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 7.9e-48 195.3 149 63.8
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 7.9e-48 195.3 155 61.3
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 7.9e-48 195.3 147 64.6
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 1.0e-47 194.9 180 55.0
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 1.0e-47 194.9 150 62.0
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.0e-47 194.9 152 61.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 1.3e-47 194.5 151 62.9
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.8e-47 194.1 155 61.9
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 3.0e-47 193.4 150 63.3
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 3.0e-47 193.4 150 63.3
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 3.0e-47 193.4 150 63.3
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.9e-47 193.0 152 61.2
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 5.1e-47 192.6 152 61.8
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 5.1e-47 192.6 183 53.6
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 5.1e-47 192.6 150 62.0
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 5.1e-47 192.6 147 65.3
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 5.1e-47 192.6 150 62.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 6.7e-47 192.2 150 62.0
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 6.7e-47 192.2 150 62.0
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 6.7e-47 192.2 147 63.9
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 6.7e-47 192.2 152 63.2
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 8.7e-47 191.8 147 63.3
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.1e-46 191.4 150 62.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 1.1e-46 191.4 150 62.0
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 1.5e-46 191.0 151 60.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.9e-46 190.7 150 62.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 3.3e-46 189.9 151 59.6
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 3.3e-46 189.9 150 61.3
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 4.3e-46 189.5 150 62.0
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 5.6e-46 189.1 149 59.7
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 9.6e-46 188.3 187 53.5
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.6e-45 187.6 150 60.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 1.6e-45 187.6 148 62.2
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.6e-45 187.6 153 60.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 2.1e-45 187.2 148 58.8
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 2.8e-45 186.8 147 59.2
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.5e-43 181.0 147 59.2
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 6.5e-42 175.6 145 57.2
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 8.4e-42 175.3 143 59.4
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.8e-39 167.5 156 53.2
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 2.1e-37 160.6 149 54.4
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 2.8e-37 160.2 150 54.7
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.7e-37 159.8 149 51.0
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 8.2e-37 158.7 156 51.3
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 1.1e-36 158.3 151 53.0
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 4.1e-36 156.4 150 52.7
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.5e-35 154.5 122 61.5
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.6e-35 153.7 123 61.0
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 2.2e-34 150.6 155 51.0
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 1.9e-33 147.5 143 52.4
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 5.7e-30 136.0 89 73.0
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.6e-29 134.4 187 42.8
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.4e-28 130.6 92 67.4
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.5e-27 127.9 131 45.8
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 1.9e-25 120.9 137 43.8
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 1.4e-23 114.8 92 60.9
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 3.0e-23 113.6 140 42.1
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.1e-22 111.7 94 59.6
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.7e-21 106.7 150 43.3
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.8e-18 96.7 149 38.3
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 6.5e-18 95.9 157 37.6
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 3.6e-16 90.1 150 40.7
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 3.6e-16 90.1 150 40.7
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.3e-12 76.3 51 66.7
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 7.0e-12 75.9 164 30.5
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 3.5e-11 73.6 90 45.6
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 1.0e-10 72.0 98 37.8
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 1.3e-10 71.6 59 59.3
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.7e-10 71.2 149 32.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.4e-06 56.6 61 44.3


User provided reference genes

Program Settings