Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.8e-44 182.2 92 100.0
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.8e-16 88.6 88 55.7
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 6.1e-16 87.4 85 57.6
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 8.0e-16 87.0 92 56.5
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.0e-15 86.7 95 54.7
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.4e-15 86.3 84 54.8
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.4e-15 86.3 84 54.8
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.8e-15 85.9 86 57.0
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.8e-15 85.9 85 56.5
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.3e-15 85.5 92 55.4
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 6.8e-15 84.0 84 57.1
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 6.8e-15 84.0 95 50.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 8.8e-15 83.6 90 51.1
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 8.8e-15 83.6 85 52.9
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.2e-14 83.2 85 56.5
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.2e-14 83.2 89 53.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.2e-14 83.2 86 54.7
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.5e-14 82.8 82 52.4
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-14 82.8 89 52.8
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 2.0e-14 82.4 91 52.7
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.6e-14 82.0 85 55.3
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 2.6e-14 82.0 85 54.1
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.4e-14 81.6 84 56.0
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.4e-14 81.6 84 56.0
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.4e-14 81.6 87 50.6
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.4e-14 81.3 86 51.2
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.4e-14 81.3 84 56.0
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 4.4e-14 81.3 80 55.0
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 5.7e-14 80.9 85 55.3
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.7e-14 80.9 84 53.6
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 5.7e-14 80.9 85 51.8
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 7.5e-14 80.5 85 51.8
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 7.5e-14 80.5 85 51.8
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 7.5e-14 80.5 85 51.8
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 9.8e-14 80.1 91 50.5
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.3e-13 79.7 85 51.8
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.2e-13 79.0 85 54.1
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.8e-13 78.6 85 51.8
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.8e-13 78.6 84 53.6
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 2.8e-13 78.6 85 51.8
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 3.7e-13 78.2 92 51.1
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 3.7e-13 78.2 83 53.0
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.7e-13 78.2 85 50.6
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 3.7e-13 78.2 85 50.6
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 4.9e-13 77.8 82 50.0
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.9e-13 77.8 85 51.8
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 4.9e-13 77.8 84 53.6
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 8.3e-13 77.0 85 50.6
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.3e-13 77.0 87 52.9
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.1e-12 76.6 89 48.3
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.1e-12 76.6 89 48.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.1e-12 76.6 82 52.4
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.1e-12 76.6 91 49.5
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.1e-12 76.6 85 52.9
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.4e-12 76.3 84 48.8
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.4e-12 76.3 83 53.0
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.4e-12 76.3 88 50.0
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.8e-12 75.9 84 51.2
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.8e-12 75.9 84 48.8
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.4e-12 75.5 89 47.2
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 2.4e-12 75.5 89 47.2
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 2.4e-12 75.5 89 47.2
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 2.4e-12 75.5 88 51.1
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.4e-12 75.5 88 51.1
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 2.4e-12 75.5 87 47.1
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.1e-12 75.1 89 47.2
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 3.1e-12 75.1 85 50.6
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.1e-12 75.1 86 51.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 3.1e-12 75.1 88 51.1
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 5.4e-12 74.3 86 47.7
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 5.4e-12 74.3 86 50.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 7.0e-12 73.9 87 47.1
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 7.0e-12 73.9 84 51.2
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.0e-12 73.9 87 49.4
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 9.2e-12 73.6 84 50.0
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.6e-11 72.8 93 46.2
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.7e-11 72.0 87 49.4
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.7e-11 72.0 87 48.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.7e-11 72.0 89 47.2
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 3.5e-11 71.6 83 51.8
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 4.5e-11 71.2 84 47.6
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 7.8e-11 70.5 85 48.2
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.0e-10 70.1 87 46.0
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.0e-10 70.1 86 45.3
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.7e-10 69.3 88 46.6
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.3e-10 68.9 92 48.9
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 5.0e-10 67.8 88 44.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 8.6e-10 67.0 92 43.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.5e-09 66.2 85 43.5
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.5e-09 66.2 103 43.7
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.9e-09 65.9 87 43.7
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 3.3e-09 65.1 92 44.6
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 4.3e-09 64.7 92 40.2
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 4.3e-09 64.7 81 45.7
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 5.6e-09 64.3 83 49.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 9.5e-09 63.5 95 41.1
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 9.5e-09 63.5 115 40.0
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.2e-08 63.2 86 44.2
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 1.6e-08 62.8 88 44.3
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.6e-08 62.8 93 41.9
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 2.1e-08 62.4 111 38.7
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.8e-08 62.0 98 40.8
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.8e-08 62.0 85 44.7
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.1e-08 60.8 59 55.9
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 1.0e-07 60.1 90 42.2
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.8e-07 59.3 114 36.8
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 3.4e-06 55.1 94 39.4
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 4.4e-06 54.7 98 35.7


User provided reference genes

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