Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 2.0e-50 202.2 107 100.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 8.7e-14 80.5 90 56.7
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 4.3e-13 78.2 90 51.1
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 9.6e-13 77.0 90 53.3
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 3.7e-12 75.1 90 53.3
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 6.2e-12 74.3 88 52.3
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 6.2e-12 74.3 89 51.7
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 6.2e-12 74.3 88 50.0
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.1e-11 73.6 66 59.1
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 1.4e-11 73.2 90 47.8
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.4e-11 73.2 90 55.6
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.4e-11 73.2 88 54.5
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.8e-11 72.8 88 51.1
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.8e-11 72.8 71 56.3
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.4e-11 72.4 90 51.1
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 2.4e-11 72.4 64 60.9
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 2.4e-11 72.4 64 60.9
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 2.4e-11 72.4 88 52.3
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 3.1e-11 72.0 71 56.3
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.1e-11 72.0 90 55.6
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.0e-11 71.6 90 48.9
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 4.0e-11 71.6 90 48.9
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 4.0e-11 71.6 62 61.3
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 5.3e-11 71.2 64 59.4
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 5.3e-11 71.2 65 56.9
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 5.3e-11 71.2 65 56.9
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 9.0e-11 70.5 64 59.4
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 9.0e-11 70.5 90 50.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 1.2e-10 70.1 90 48.9
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.2e-10 70.1 90 52.2
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.2e-10 70.1 64 57.8
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.2e-10 70.1 64 57.8
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.5e-10 69.7 64 59.4
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.5e-10 69.7 88 51.1
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.0e-10 69.3 90 52.2
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 2.0e-10 69.3 90 48.9
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 2.6e-10 68.9 64 56.2
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 3.4e-10 68.6 90 48.9
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 4.5e-10 68.2 90 48.9
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 4.5e-10 68.2 71 50.7
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 5.8e-10 67.8 93 48.4
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 5.8e-10 67.8 90 48.9
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 7.6e-10 67.4 67 53.7
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 1.3e-09 66.6 90 47.8
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.3e-09 66.6 90 47.8
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.3e-09 66.6 64 56.2
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.3e-09 66.6 64 56.2
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 2.2e-09 65.9 64 56.2
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 2.9e-09 65.5 91 47.3
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 2.9e-09 65.5 91 47.3
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 2.9e-09 65.5 68 52.9
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 2.9e-09 65.5 64 56.2
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 4.9e-09 64.7 93 46.2
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 8.4e-09 63.9 90 47.8
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 8.4e-09 63.9 88 47.7
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 1.1e-08 63.5 87 49.4
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 2.5e-08 62.4 90 48.9
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 2.5e-08 62.4 87 47.1
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.2e-08 62.0 88 46.6
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 3.2e-08 62.0 79 49.4
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 4.2e-08 61.6 88 45.5
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 4.2e-08 61.6 89 44.9
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.2e-08 61.6 88 46.6
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 5.5e-08 61.2 59 55.9
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 7.1e-08 60.8 89 43.8
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 7.1e-08 60.8 89 43.8
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 7.1e-08 60.8 88 45.5
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 9.3e-08 60.5 87 48.3
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 1.6e-07 59.7 91 45.1
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.1e-07 59.3 59 55.9
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 2.7e-07 58.9 65 53.8
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 2.7e-07 58.9 91 44.0
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 2.7e-07 58.9 81 50.6
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 4.6e-07 58.2 85 45.9
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 6.0e-07 57.8 91 45.1
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 6.0e-07 57.8 92 44.6
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 1.0e-06 57.0 81 49.4
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 1.3e-06 56.6 89 42.7
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.3e-06 56.6 87 44.8
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 1.8e-06 56.2 89 41.6
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 2.3e-06 55.8 78 42.3
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 2.3e-06 55.8 78 42.3
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 2.3e-06 55.8 78 42.3
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.0e-06 55.5 90 43.3
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 3.0e-06 55.5 81 45.7
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 3.9e-06 55.1 85 42.4
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 3.9e-06 55.1 85 42.4
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 3.9e-06 55.1 81 45.7


User provided reference genes

Program Settings