Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24877 Sapria himalayana HOM05D000818 ORTHO05D001324 1.5e-187 659.4 351 100.0
Manes.14G134700 Manihot esculenta HOM05D000818 ORTHO05D001324 1.7e-50 204.1 369 46.3
CiPaw.09G117000 Carya illinoinensis HOM05D000818 ORTHO05D001324 8.0e-48 195.3 372 43.8
COL.COLO4_17677 Corchorus olitorius HOM05D000818 ORTHO05D001324 5.2e-47 192.6 364 42.6
Manes.06G060700 Manihot esculenta HOM05D000818 ORTHO05D001324 2.6e-46 190.3 366 40.2
Thecc.02G011700 Theobroma cacao HOM05D000818 ORTHO05D001324 3.7e-45 186.4 364 40.7
Gorai.002G142000 Gossypium raimondii HOM05D000818 ORTHO05D001324 8.2e-45 185.3 375 42.7
Gohir.A01G128200 Gossypium hirsutum HOM05D000818 ORTHO05D001324 1.1e-44 184.9 363 41.3
Gohir.D01G116500 Gossypium hirsutum HOM05D000818 ORTHO05D001324 4.1e-44 183.0 375 41.6
Ciclev10014533m.g Citrus clementina HOM05D000818 ORTHO05D001324 5.3e-44 182.6 361 42.4
Atru.chr10.915 Acer truncatum HOM05D000818 ORTHO05D001324 1.2e-43 181.4 371 41.5
Atru.chr10.932 Acer truncatum HOM05D000818 ORTHO05D001324 1.2e-43 181.4 371 41.5
QL05p053710 Quercus lobata HOM05D000818 ORTHO05D001324 1.6e-43 181.0 348 42.5
GSVIVG01021596001 Vitis vinifera HOM05D000818 ORTHO05D001324 1.6e-43 181.0 355 39.4
CSS0032626 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 3.5e-43 179.9 381 40.2
Gohir.A03G216600 Gossypium hirsutum HOM05D000818 ORTHO05D001324 1.3e-42 177.9 360 43.6
Gohir.D02G238200 Gossypium hirsutum HOM05D000818 ORTHO05D001324 2.2e-42 177.2 355 42.5
Gorai.005G266700 Gossypium raimondii HOM05D000818 ORTHO05D001324 2.2e-42 177.2 355 42.5
CSS0009022 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 2.9e-42 176.8 380 39.7
Prupe.4G088700 Prunus persica HOM05D000818 ORTHO05D001324 5.0e-42 176.0 373 38.9
Oeu041096.3 Olea europaea HOM05D000818 ORTHO05D001324 8.5e-42 175.3 351 37.3
Haze_05747 Corylus avellana HOM05D000818 ORTHO05D001324 1.4e-39 167.9 369 40.4
PGR031G3646 Punica granatum HOM05D000818 ORTHO05D001324 1.4e-39 167.9 369 39.0
TWI09G0387 Tripterygium wilfordii HOM05D000818 ORTHO05D001324 1.8e-39 167.5 365 38.9
FAN11G3883 Fragaria x ananassa HOM05D000818 ORTHO05D001324 3.0e-39 166.8 366 36.6
Lj1A1164G82 Lonicera japonica HOM05D000818 ORTHO05D001324 3.0e-39 166.8 363 39.1
FvH4_3g09830 Fragaria vesca HOM05D000818 ORTHO05D001324 6.8e-39 165.6 366 36.6
MELO3C002796.2 Cucumis melo HOM05D000818 ORTHO05D001324 1.5e-38 164.5 373 39.7
FAN16G1034 Fragaria x ananassa HOM05D000818 ORTHO05D001324 3.4e-38 163.3 363 36.6
RcHm_v2.0_Chr5g0015541 Rosa chinensis HOM05D000818 ORTHO05D001324 4.4e-38 162.9 357 38.4
Cpa.g.sc17.76 Carica papaya HOM05D000818 ORTHO05D001324 7.5e-38 162.2 345 42.6
Duzib132G1135 Durio zibethinus HOM05D000818 ORTHO05D001324 1.7e-37 161.0 367 41.1
TAR626G0133 Trochodendron aralioides HOM05D000818 ORTHO05D001324 1.7e-37 161.0 388 39.2
CsaV3_1G037440 Cucumis sativus L. HOM05D000818 ORTHO05D001324 2.2e-37 160.6 361 39.6
THA.LOC104798610 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 2.8e-37 160.2 349 39.0
Migut.M01882 Erythranthe guttata HOM05D000818 ORTHO05D001324 4.8e-37 159.5 352 39.5
Duzib052G0403 Durio zibethinus HOM05D000818 ORTHO05D001324 1.1e-36 158.3 345 39.7
SalBow8G4714 Salvia bowleyana HOM05D000818 ORTHO05D001324 2.4e-36 157.1 353 36.0
AL4G30660 Arabidopsis lyrata HOM05D000818 ORTHO05D001324 4.1e-36 156.4 389 35.7
Lalb_Chr08g0233211 Lupinus albus HOM05D000818 ORTHO05D001324 4.1e-36 156.4 353 38.0
BraA03t11177Z Brassica rapa HOM05D000818 ORTHO05D001324 7.0e-36 155.6 390 38.7
BcaC01g05785 Brassica carinata HOM05D000818 ORTHO05D001324 9.1e-36 155.2 390 38.2
Carub.0004s1636 Capsella rubella HOM05D000818 ORTHO05D001324 9.1e-36 155.2 393 35.9
C03p22420 Brassica napus HOM05D000818 ORTHO05D001324 1.2e-35 154.8 390 38.5
Sed0015107 Sechium edule HOM05D000818 ORTHO05D001324 2.7e-35 153.7 356 39.6
Oeu015190.1 Olea europaea HOM05D000818 ORTHO05D001324 3.5e-35 153.3 354 37.6
Nn3g20259 Nelumbo nucifera HOM05D000818 ORTHO05D001324 5.9e-35 152.5 386 37.3
A03p19220 Brassica napus HOM05D000818 ORTHO05D001324 1.0e-34 151.8 390 37.7
MSTRG.7530 Avicennia marina HOM05D000818 ORTHO05D001324 1.3e-34 151.4 343 39.4
BolC3t14625H Brassica oleracea HOM05D000818 ORTHO05D001324 1.7e-34 151.0 397 38.5
Eucgr.E02479 Eucalyptus grandis HOM05D000818 ORTHO05D001324 1.7e-34 151.0 340 39.4
CANSAT35G0982 Cannabis sativa HOM05D000818 ORTHO05D001324 2.9e-34 150.2 353 37.7
Cc00_g11240 Coffea canephora HOM05D000818 ORTHO05D001324 2.9e-34 150.2 364 34.9
AT2G34670 Arabidopsis thaliana HOM05D000818 ORTHO05D001324 3.8e-34 149.8 391 35.8
unitig_748.g7676 Utricularia gibba HOM05D000818 ORTHO05D001324 3.8e-34 149.8 365 39.2
DCAR_003870 Daucus carota HOM05D000818 ORTHO05D001324 1.1e-33 148.3 380 36.1
Lj6g0017584 Lotus japonicus HOM05D000818 ORTHO05D001324 1.5e-33 147.9 365 33.2
Ca_02519_v3 Cicer arietinum L. HOM05D000818 ORTHO05D001324 9.4e-33 145.2 343 36.4
Medtr2g048360 Medicago truncatula HOM05D000818 ORTHO05D001324 1.2e-32 144.8 352 35.5
CARHR128790 Cardamine hirsuta HOM05D000818 ORTHO05D001324 1.6e-32 144.4 387 35.7
Sp4g16950 Schrenkiella parvula HOM05D000818 ORTHO05D001324 4.7e-32 142.9 403 37.0
Aa31LG10G6670 Aethionema arabicum HOM05D000818 ORTHO05D001324 6.1e-32 142.5 383 38.1
Sc24g0001510 Simmondsia chinensis HOM05D000818 ORTHO05D001324 6.1e-32 142.5 373 35.1
Phvul.009G217000 Phaseolus vulgaris HOM05D000818 ORTHO05D001324 3.0e-31 140.2 348 33.6
Thhalv10016345m.g Eutrema salsugineum HOM05D000818 ORTHO05D001324 4.0e-31 139.8 396 37.1
TPR.G18741 Trifolium pratense HOM05D000818 ORTHO05D001324 6.8e-31 139.0 350 34.6
VMungo1309G1432 Vigna mungo HOM05D000818 ORTHO05D001324 1.5e-30 137.9 347 34.0
Glyma.15G193200 Glycine max HOM05D000818 ORTHO05D001324 2.0e-30 137.5 357 34.5
THA.LOC104814319 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 3.4e-30 136.7 380 34.2
AUR62042761 Chenopodium quinoa HOM05D000818 ORTHO05D001324 1.3e-29 134.8 362 32.3
EL10Ac8g19594 Beta vulgaris HOM05D000818 ORTHO05D001324 1.7e-29 134.4 359 35.9
MD05G1275400 Malus domestica HOM05D000818 ORTHO05D001324 2.8e-29 133.7 360 34.7
arahy.Tifrunner.gnm1.ann1.BD3DHQ Arachis hypogaea HOM05D000818 ORTHO05D001324 6.3e-29 132.5 355 32.4
arahy.Tifrunner.gnm1.ann1.4BR0CS Arachis hypogaea HOM05D000818 ORTHO05D001324 1.8e-28 131.0 357 31.9
AUR62033041 Chenopodium quinoa HOM05D000818 ORTHO05D001324 5.4e-28 129.4 362 30.9
ClCG03G006360 Citrullus lanatus HOM05D000818 ORTHO05D001324 1.2e-27 128.3 334 37.4
Psat1g019280 Pisum sativum HOM05D000818 ORTHO05D001324 4.5e-27 126.3 341 36.4
Glyma.09G085000 Glycine max HOM05D000818 ORTHO05D001324 5.9e-27 125.9 352 32.4
Ah.14g086220 Amaranthus hybridus HOM05D000818 ORTHO05D001324 7.7e-27 125.6 341 34.0
Aqoxy4G00027 Aquilegia oxysepala HOM05D000818 ORTHO05D001324 1.6e-24 117.9 352 32.7
Dinv32192 Davidia involucrata HOM05D000818 ORTHO05D001324 8.0e-24 115.5 138 48.6
Actinidia39599 Actinidia chinensis HOM05D000818 ORTHO05D001324 2.3e-23 114.0 239 37.7
Rhsim07G0193600 Rhododendron simsii HOM05D000818 ORTHO05D001324 5.2e-23 112.8 263 38.8
Rhsim07G0193700 Rhododendron simsii HOM05D006915 ORTHO05D008716 5.2e-23 112.8 263 38.8
Nn4g26655 Nelumbo nucifera HOM05D000818 ORTHO05D001324 2.6e-22 110.5 311 36.3
Hma1.2p1_1418F.1_g282310 Hydrangea macrophylla HOM05D000818 ORTHO05D001324 2.2e-21 107.5 250 39.6
MD10G1254900 Malus domestica HOM05D000818 ORTHO05D001324 1.1e-20 105.1 135 48.9
ATR1098G073 Amborella trichopoda HOM05D000818 ORTHO05D001324 5.4e-20 102.8 401 28.4
Zm00001eb357310 Zea mays HOM05D000818 ORTHO05D001324 2.0e-19 100.9 398 31.7
PSO675G4099 Papaver somniferum HOM05D000818 ORTHO05D001324 5.9e-19 99.4 405 31.1
CDE02G1597 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.0e-18 98.6 362 33.1
PSO675G0886 Papaver somniferum HOM05D000818 ORTHO05D001324 1.7e-18 97.8 400 30.8
Dinv32191 Davidia involucrata HOM05D000818 ORTHO05D001324 5.6e-17 92.8 76 67.1
Zm00001eb160590 Zea mays HOM05D000818 ORTHO05D001324 9.5e-17 92.0 398 30.9
SEGI_02497 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 2.3e-15 87.4 424 27.1
Os01g0585600 Oryza sativa ssp. japonica HOM05D000818 ORTHO05D001324 7.5e-14 82.4 396 30.1
SGA_v2.0_scaffold223G42850 Striga asiatica HOM05D000818 ORTHO05D001324 4.6e-11 73.2 62 56.5
PSO675G0382 Papaver somniferum HOM05D000818 ORTHO05D001324 6.0e-11 72.8 372 30.4
CDE05G3409 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.0e-10 72.0 144 34.7
SEGI_13742 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 1.0e-10 72.0 409 23.5
SEGI_37967 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 3.9e-10 70.1 406 26.1
MSTRG.23398 Avicennia marina HOM05D000818 ORTHO05D001324 5.0e-10 69.7 348 24.4
Actinidia31392 Actinidia chinensis HOM05D000818 ORTHO05D001324 2.5e-09 67.4 76 52.6
Lsat_1_v5_gn_2_75801 Lactuca sativa HOM05D000818 ORTHO05D001324 9.5e-09 65.5 358 27.1
DCAR_014036 Daucus carota HOM05D000818 ORTHO05D001324 6.2e-08 62.8 350 24.6
Sed0003638 Sechium edule HOM05D000476 ORTHO05D006845 6.2e-08 62.8 79 38.0
Duzib147G1443 Durio zibethinus HOM05D000818 ORTHO05D001324 8.1e-08 62.4 351 28.2
Sed0002852 Sechium edule HOM05D000818 ORTHO05D001324 1.8e-07 61.2 346 25.1
Aqoxy6G02199 Aquilegia oxysepala HOM05D000818 ORTHO05D001324 2.3e-07 60.8 349 23.2
ClCG07G009590 Citrullus lanatus HOM05D000476 ORTHO05D006845 2.3e-07 60.8 85 40.0
Duzib187G1541 Durio zibethinus HOM05D000818 ORTHO05D001324 3.1e-07 60.5 346 27.5
Lsat_1_v5_gn_4_145681 Lactuca sativa HOM05D000818 ORTHO05D001324 3.1e-07 60.5 350 24.3
PSO133G0086 Papaver somniferum HOM05D000476 ORTHO05D006845 3.1e-07 60.5 87 33.3
CANSAT25G2656 Cannabis sativa HOM05D000818 ORTHO05D001324 4.0e-07 60.1 354 24.9
MELO3C007924.2 Cucumis melo HOM05D000818 ORTHO05D001324 5.2e-07 59.7 351 25.6
AUR62003771 Chenopodium quinoa HOM05D000476 ORTHO05D006845 6.8e-07 59.3 357 24.9
Sed0021505 Sechium edule HOM05D000476 ORTHO05D006845 6.8e-07 59.3 85 36.5
CsaV3_6G047330 Cucumis sativus L. HOM05D000818 ORTHO05D001324 8.9e-07 58.9 351 25.1
MELO3C017591.2 Cucumis melo HOM05D000476 ORTHO05D006845 1.2e-06 58.5 85 38.8
PSO293G0003 Papaver somniferum HOM05D000818 ORTHO05D001324 1.5e-06 58.2 361 27.1
Glyma.01G164500 Glycine max HOM05D000818 ORTHO05D001324 2.0e-06 57.8 352 27.0
SalBow3G3960 Salvia bowleyana HOM05D000818 ORTHO05D001324 2.0e-06 57.8 356 28.1
SEGI_40428 Sequoiadendron giganteum HOM05D000476 ORTHO05D004987 2.6e-06 57.4 73 39.7
Eucgr.J02464 Eucalyptus grandis HOM05D000818 ORTHO05D001324 3.4e-06 57.0 363 26.4
Gorai.007G049300 Gossypium raimondii HOM05D000818 ORTHO05D001324 3.4e-06 57.0 357 26.9
unitig_699.g19704 Utricularia gibba HOM05D000818 ORTHO05D001324 3.4e-06 57.0 351 24.8
Cfa006998 Carpinus fangiana HOM05D000818 ORTHO05D001324 4.4e-06 56.6 351 28.2
CDE05G1017 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 4.4e-06 56.6 347 23.6
Dinv16303 Davidia involucrata HOM05D000476 ORTHO05D006845 4.4e-06 56.6 85 37.6
Lalb_Chr07g0180601 Lupinus albus HOM05D000476 ORTHO05D004987 4.4e-06 56.6 73 34.2
Manes.01G147200 Manihot esculenta HOM05D000818 ORTHO05D001324 4.4e-06 56.6 345 24.9
TAR628G1292 Trochodendron aralioides HOM05D000818 ORTHO05D001324 4.4e-06 56.6 352 26.4
Aqoxy6G00584 Aquilegia oxysepala HOM05D000476 ORTHO05D006845 5.8e-06 56.2 85 36.5
CAN.G725.3 Capsicum annuum HOM05D000476 ORTHO05D006845 5.8e-06 56.2 427 23.7
Gohir.D11G046000 Gossypium hirsutum HOM05D000818 ORTHO05D001324 5.8e-06 56.2 357 26.6
Sabra07G0074000 Salix brachista HOM05D000476 ORTHO05D006845 5.8e-06 56.2 72 36.1
TAR628G1288 Trochodendron aralioides HOM05D000476 ORTHO05D006845 5.8e-06 56.2 79 34.2
Ciclev10007564m.g Citrus clementina HOM05D000818 ORTHO05D002481 7.5e-06 55.8 73 42.5
HanXRQChr13g0414601 Helianthus annuus HOM05D000818 ORTHO05D001324 7.5e-06 55.8 352 27.0
MBI05_g34469_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D006845 7.5e-06 55.8 85 34.1
Potri.005G077700 Populus trichocarpa HOM05D000476 ORTHO05D006845 7.5e-06 55.8 72 36.1
vmacro18608 Vaccinium macrocarpon HOM05D000476 ORTHO05D006845 7.5e-06 55.8 79 35.4
Zm00001eb035710 Zea mays HOM05D000476 ORTHO05D004987 7.5e-06 55.8 59 44.1
Ah.03g142480 Amaranthus hybridus HOM05D000476 ORTHO05D006845 9.8e-06 55.5 419 22.4
SMO307G0007 Selaginella moellendorffii HOM05D000818 ORTHO05D001324 9.8e-06 55.5 370 23.2
Hund13641 Selenicereus undatus HOM05D000476 ORTHO05D006845 9.8e-06 55.5 89 34.8


User provided reference genes

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