Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 4.8e-177 625.5 712 100.0
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 5.4e-43 180.3 192 53.6
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 7.8e-34 149.8 152 52.0
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 1.3e-33 149.1 152 51.3
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 3.0e-33 147.9 152 51.3
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 3.9e-33 147.5 150 52.7
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 8.6e-33 146.4 143 51.7
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 8.6e-33 146.4 138 54.3
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 1.1e-32 146.0 149 54.4
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 2.5e-32 144.8 145 51.7
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 2.5e-32 144.8 150 52.7
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 2.5e-32 144.8 150 52.7
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 3.3e-32 144.4 137 55.5
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 5.6e-32 143.7 133 55.6
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 7.3e-32 143.3 179 45.3
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 9.5e-32 142.9 147 52.4
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 9.5e-32 142.9 190 46.3
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.2e-31 142.5 191 46.1
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.6e-31 142.1 158 48.1
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 2.1e-31 141.7 145 52.4
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 3.6e-31 141.0 154 50.6
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 6.2e-31 140.2 190 47.9
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 8.1e-31 139.8 134 53.7
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 8.1e-31 139.8 196 43.4
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 8.1e-31 139.8 137 55.5
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.1e-30 139.4 151 50.3
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 1.4e-30 139.0 146 49.3
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.8e-30 138.7 134 53.0
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.8e-30 138.7 134 53.0
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 2.3e-30 138.3 134 53.0
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 2.3e-30 138.3 134 53.0
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 2.3e-30 138.3 151 52.3
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 6.8e-30 136.7 146 52.1
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.2e-29 136.0 154 48.1
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 2.0e-29 135.2 133 53.4
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 2.6e-29 134.8 151 51.0
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 2.6e-29 134.8 141 49.6
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 3.4e-29 134.4 133 51.9
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 7.5e-29 133.3 139 50.4
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 9.8e-29 132.9 185 42.2
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 9.8e-29 132.9 142 46.5
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 9.8e-29 132.9 139 48.2
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 9.8e-29 132.9 145 47.6
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 1.3e-28 132.5 138 51.4
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 1.3e-28 132.5 147 47.6
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 1.7e-28 132.1 151 48.3
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 2.2e-28 131.7 181 43.6
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 2.9e-28 131.3 169 46.2
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 2.9e-28 131.3 152 47.4
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 3.7e-28 131.0 188 42.6
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 4.9e-28 130.6 189 45.0
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.9e-28 130.6 189 45.0
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 6.4e-28 130.2 157 43.9
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 8.3e-28 129.8 145 46.9
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 8.3e-28 129.8 141 50.4
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.1e-27 129.4 119 51.3
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 1.1e-27 129.4 138 50.0
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 1.1e-27 129.4 146 45.9
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 1.1e-27 129.4 149 48.3
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 1.4e-27 129.0 146 49.3
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 1.4e-27 129.0 147 46.9
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.4e-27 129.0 149 49.0
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 4.1e-27 127.5 179 41.9
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.1e-27 127.5 112 57.1
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 7.1e-27 126.7 144 47.2
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 7.1e-27 126.7 148 48.0
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 7.1e-27 126.7 148 48.0
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 9.2e-27 126.3 119 50.4
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.2e-26 125.9 145 46.2
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 2.1e-26 125.2 180 42.8
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 3.5e-26 124.4 116 52.6
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 6.0e-26 123.6 116 53.4
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 6.0e-26 123.6 180 41.7
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 7.8e-26 123.2 121 53.7
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 7.8e-26 123.2 202 42.6
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 7.8e-26 123.2 176 42.0
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 2.3e-25 121.7 105 57.1
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 5.1e-25 120.6 136 50.7
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.5e-24 119.0 192 41.7
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.5e-24 119.0 121 52.1
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 1.9e-24 118.6 111 54.1
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 7.3e-24 116.7 148 44.6
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 7.3e-24 116.7 145 44.1
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.1e-23 115.2 158 38.6
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 1.4e-22 112.5 144 41.7
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 5.2e-22 110.5 113 49.6
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 4.4e-21 107.5 105 49.5
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 4.4e-21 107.5 108 51.9
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 1.3e-20 105.9 142 39.4
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 3.7e-20 104.4 120 43.3
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 1.2e-18 99.4 94 54.3
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 4.6e-18 97.4 148 39.9
RcHm_v2.0_Chr7g0211421 Rosa chinensis HOM05D007439 ORTHO05D009294 4.6e-18 97.4 93 55.9
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 1.3e-17 95.9 142 37.3
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.5e-16 92.4 86 48.8
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 5.6e-16 90.5 118 43.2
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 5.6e-16 90.5 86 48.8
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 1.6e-15 89.0 107 41.1
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 4.7e-15 87.4 107 40.2
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 2.4e-11 75.1 109 33.9
Haze_06045 Corylus avellana HOM05D001622 ORTHO05D009294 7.1e-11 73.6 81 46.9
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 3.5e-10 71.2 110 30.0
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 9.6e-08 63.2 81 44.4
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 1.4e-06 59.3 79 43.0


User provided reference genes

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