Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.6e-299 1031.9 523 100.0
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.5e-15 87.4 557 26.0
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 8.6e-14 82.8 70 62.9
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 4.3e-13 80.5 59 67.8
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 5.6e-13 80.1 59 69.5
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 7.3e-13 79.7 64 59.4
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 9.5e-13 79.3 61 68.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 9.5e-13 79.3 549 26.6
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.2e-12 79.0 57 66.7
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.8e-12 77.8 67 58.2
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.6e-12 77.4 60 63.3
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.6e-12 77.4 69 59.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 4.7e-12 77.0 61 67.2
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.7e-12 77.0 67 58.2
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 6.1e-12 76.6 67 58.2
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 8.0e-12 76.3 65 58.5
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.0e-11 75.9 59 64.4
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.4e-11 75.5 58 69.0
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-11 75.1 71 54.9
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.8e-11 75.1 60 61.7
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.8e-11 75.1 62 61.3
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.8e-11 75.1 60 60.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.8e-11 75.1 60 60.0
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.3e-11 74.7 61 62.3
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-11 74.3 71 54.9
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.1e-11 74.3 71 54.9
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 3.1e-11 74.3 71 54.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.1e-11 74.3 66 56.1
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 3.1e-11 74.3 67 58.2
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 3.1e-11 74.3 59 62.7
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.1e-11 74.3 59 62.7
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 3.1e-11 74.3 65 56.9
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 4.0e-11 73.9 59 61.0
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.0e-11 73.9 61 67.2
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 5.2e-11 73.6 60 58.3
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 8.9e-11 72.8 60 63.3
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 8.9e-11 72.8 61 60.7
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 8.9e-11 72.8 66 54.5
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 8.9e-11 72.8 61 63.9
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 8.9e-11 72.8 68 52.9
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.2e-10 72.4 60 61.7
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.2e-10 72.4 60 58.3
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.2e-10 72.4 60 60.0
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-10 72.0 71 54.9
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.5e-10 72.0 58 65.5
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.0e-10 71.6 98 46.9
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.0e-10 71.6 66 57.6
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.0e-10 71.6 71 53.5
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 2.0e-10 71.6 61 62.3
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.0e-10 71.6 516 24.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.6e-10 71.2 63 58.7
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.6e-10 71.2 129 41.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.4e-10 70.9 60 58.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 4.4e-10 70.5 69 52.2
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-10 70.5 65 56.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 4.4e-10 70.5 66 53.0
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 4.4e-10 70.5 60 56.7
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 4.4e-10 70.5 123 43.1
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.4e-10 70.5 60 60.0
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 5.8e-10 70.1 56 62.5
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 5.8e-10 70.1 56 62.5
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 7.5e-10 69.7 58 63.8
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 9.8e-10 69.3 59 55.9
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 9.8e-10 69.3 115 35.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.8e-10 69.3 56 64.3
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.3e-09 68.9 63 52.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.3e-09 68.9 65 55.4
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 2.2e-09 68.2 65 56.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 2.2e-09 68.2 88 47.7
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.9e-09 67.8 69 53.6
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 2.9e-09 67.8 60 51.7
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 6.4e-09 66.6 68 54.4
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 6.4e-09 66.6 58 60.3
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.4e-09 66.6 63 49.2
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 6.4e-09 66.6 88 45.5
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 6.4e-09 66.6 65 53.8
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 6.4e-09 66.6 65 50.8
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 8.3e-09 66.2 97 45.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 8.3e-09 66.2 61 57.4
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-08 65.9 480 24.6
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-08 65.9 499 23.4
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-08 65.9 499 23.4
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.1e-08 65.9 68 52.9
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.1e-08 65.9 104 42.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.4e-08 65.5 66 53.0
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.9e-08 65.1 60 50.0
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.9e-08 65.1 98 41.8
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.4e-08 64.7 61 59.0
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.1e-08 63.9 62 54.8
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-08 63.9 69 53.6
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 4.1e-08 63.9 62 54.8
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.4e-08 63.5 506 24.5
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 5.4e-08 63.5 127 39.4
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 5.4e-08 63.5 62 54.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 7.0e-08 63.2 58 60.3
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 7.0e-08 63.2 69 53.6
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.0e-08 63.2 127 38.6
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 7.0e-08 63.2 60 55.0
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 7.0e-08 63.2 66 53.0
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 9.2e-08 62.8 64 60.9
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-07 62.4 69 52.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.2e-07 62.4 81 49.4
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.2e-07 62.4 66 51.5
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.2e-07 62.4 61 55.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.6e-07 62.0 60 53.3
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.6e-07 62.0 60 53.3
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 2.0e-07 61.6 58 58.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 2.7e-07 61.2 91 45.1
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.7e-07 61.2 69 53.6
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 2.7e-07 61.2 503 25.0
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 2.7e-07 61.2 59 47.5
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.5e-07 60.8 55 63.6
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 3.5e-07 60.8 62 54.8
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 3.5e-07 60.8 62 54.8
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 3.5e-07 60.8 62 54.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 3.5e-07 60.8 58 53.4
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 4.6e-07 60.5 140 37.1
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 4.6e-07 60.5 140 37.1
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 4.6e-07 60.5 140 37.1
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 4.6e-07 60.5 69 55.1
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 4.6e-07 60.5 61 52.5
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 6.0e-07 60.1 62 54.8
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 6.0e-07 60.1 62 54.8
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 6.0e-07 60.1 62 54.8
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 7.8e-07 59.7 140 35.7
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 7.8e-07 59.7 132 37.1
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 7.8e-07 59.7 132 37.1
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.0e-06 59.3 66 47.0
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.0e-06 59.3 55 58.2
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.3e-06 58.9 68 57.4
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.3e-06 58.9 65 50.8
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 1.7e-06 58.5 62 53.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.7e-06 58.5 513 23.2
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.3e-06 58.2 60 55.0
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-06 58.2 58 56.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.3e-06 58.2 47 59.6
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.9e-06 57.4 490 23.3
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 5.0e-06 57.0 58 51.7
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 6.6e-06 56.6 68 48.5
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 8.6e-06 56.2 69 44.9
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 8.6e-06 56.2 69 44.9


User provided reference genes

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