Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.5e-55 219.2 105 100.0
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.6e-26 122.1 79 77.2
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.8e-17 92.0 79 54.4
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 8.3e-17 90.5 79 51.9
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 8.3e-17 90.5 79 54.4
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 8.3e-17 90.5 79 54.4
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 1.1e-16 90.1 79 54.4
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-16 90.1 79 54.4
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.4e-16 89.7 79 51.9
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.4e-16 89.7 79 50.6
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.8e-16 89.4 79 51.9
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.4e-16 89.0 79 51.9
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.4e-16 89.0 79 54.4
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 4.1e-16 88.2 79 51.9
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 4.1e-16 88.2 79 53.2
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 4.1e-16 88.2 79 53.2
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.1e-16 88.2 79 53.2
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 4.1e-16 88.2 79 53.2
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.4e-16 87.8 79 51.9
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 5.4e-16 87.8 79 51.9
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.4e-16 87.8 79 53.2
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 5.4e-16 87.8 79 51.9
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 5.4e-16 87.8 79 51.9
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 50.6
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 50.6
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 53.2
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 53.2
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 53.2
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 7.0e-16 87.4 79 53.2
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 9.1e-16 87.0 79 51.9
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 9.1e-16 87.0 79 51.9
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 9.1e-16 87.0 79 51.9
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.2e-15 86.7 79 51.9
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.2e-15 86.7 79 53.2
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.2e-15 86.7 79 50.6
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 1.2e-15 86.7 79 50.6
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.6e-15 86.3 79 51.9
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.6e-15 86.3 79 51.9
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 1.6e-15 86.3 79 50.6
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 1.6e-15 86.3 79 51.9
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 1.6e-15 86.3 80 52.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 50.6
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 50.6
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 50.6
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 49.4
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 50.6
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 49.4
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 2.0e-15 85.9 79 49.4
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 2.7e-15 85.5 79 50.6
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.7e-15 85.5 79 50.6
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.7e-15 85.5 79 51.9
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 3.5e-15 85.1 79 50.6
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.5e-15 85.1 79 51.9
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 3.5e-15 85.1 79 49.4
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.5e-15 85.1 79 49.4
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 3.5e-15 85.1 79 49.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 4.5e-15 84.7 76 50.0
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 49.4
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 49.4
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 50.6
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 50.6
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 49.4
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 50.6
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 4.5e-15 84.7 79 48.1
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 49.4
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 49.4
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 49.4
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 49.4
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 50.6
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 50.6
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 5.9e-15 84.3 79 49.4
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 50.6
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 49.4
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 46.8
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 50.6
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 46.8
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 49.4
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 7.7e-15 84.0 79 49.4
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.0e-14 83.6 79 49.4
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 1.0e-14 83.6 79 45.6
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.0e-14 83.6 79 48.1
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.0e-14 83.6 79 49.4
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.0e-14 83.6 79 49.4
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-14 83.2 79 50.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.3e-14 83.2 79 45.6
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 1.3e-14 83.2 79 49.4
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.7e-14 82.8 79 46.8
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.7e-14 82.8 79 48.1
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.2e-14 82.4 79 46.8
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 2.2e-14 82.4 79 46.8
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.2e-14 82.4 79 48.1
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.2e-14 82.4 79 46.8
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-14 82.0 79 49.4
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 2.9e-14 82.0 79 49.4
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 3.8e-14 81.6 79 48.1
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 3.8e-14 81.6 79 46.8
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.8e-14 81.6 79 45.6
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 3.8e-14 81.6 81 48.1
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 5.0e-14 81.3 79 48.1
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 5.0e-14 81.3 79 48.1
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 5.0e-14 81.3 79 49.4
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 6.5e-14 80.9 79 48.1
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 6.5e-14 80.9 76 50.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 6.5e-14 80.9 79 48.1
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 6.5e-14 80.9 79 48.1
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 6.5e-14 80.9 79 48.1
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 6.5e-14 80.9 79 48.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 8.5e-14 80.5 79 46.8
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 8.5e-14 80.5 79 48.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 8.5e-14 80.5 79 48.1
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 8.5e-14 80.5 79 45.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.1e-13 80.1 79 46.8
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.1e-13 80.1 79 45.6
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 1.9e-13 79.3 79 45.6
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 2.5e-13 79.0 79 45.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 3.2e-13 78.6 79 44.3
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 3.2e-13 78.6 79 45.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 5.5e-13 77.8 89 42.7
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 5.5e-13 77.8 79 43.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 9.5e-13 77.0 92 43.5
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.2e-12 76.6 79 46.8
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 6.1e-12 74.3 79 45.6
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 6.1e-12 74.3 79 44.3
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.0e-11 73.6 79 41.8
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.8e-11 72.8 79 40.5
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.8e-11 72.8 79 40.5
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.3e-11 72.4 79 40.5
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 5.2e-11 71.2 82 40.2
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 6.8e-11 70.9 81 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-10 70.1 79 38.0
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 2.0e-10 69.3 83 41.0
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.0e-10 69.3 111 34.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 4.4e-10 68.2 82 43.9
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.2e-09 65.9 139 30.9
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 3.7e-09 65.1 66 43.9
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.1e-08 63.5 57 49.1
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.1e-08 63.5 79 35.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 1.1e-08 63.5 53 52.8
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.9e-06 55.5 55 41.8
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 6.6e-06 54.3 82 32.9


User provided reference genes

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