Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 4.9e-121 438.0 242 100.0
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 4.8e-60 235.3 168 65.5
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 1.8e-59 233.4 169 63.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.8e-59 233.4 169 63.3
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.1e-59 232.3 169 62.7
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 5.3e-59 231.9 168 63.1
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 7.6e-58 228.0 173 61.8
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 7.6e-58 228.0 169 60.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 7.6e-58 228.0 169 61.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 1.3e-57 227.3 172 60.5
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.3e-57 227.3 173 61.3
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.7e-57 226.9 169 61.5
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 1.7e-57 226.9 168 60.7
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 2.2e-57 226.5 168 61.9
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 2.9e-57 226.1 168 61.3
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 2.9e-57 226.1 168 61.3
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 6.5e-57 224.9 173 61.8
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 8.4e-57 224.6 172 59.3
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 8.4e-57 224.6 173 60.7
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 8.4e-57 224.6 166 63.9
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.4e-56 223.8 168 61.3
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 1.9e-56 223.4 168 61.3
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.9e-56 223.4 169 62.7
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 4.2e-56 222.2 173 59.5
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 4.2e-56 222.2 168 60.7
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 4.2e-56 222.2 166 62.0
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 4.2e-56 222.2 169 60.9
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.2e-56 222.2 169 60.4
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 5.5e-56 221.9 166 62.7
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.5e-56 221.9 166 62.7
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 5.5e-56 221.9 166 62.7
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 5.5e-56 221.9 174 59.2
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 5.5e-56 221.9 168 60.1
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 7.2e-56 221.5 166 61.4
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 7.2e-56 221.5 167 62.9
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 9.3e-56 221.1 168 59.5
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 9.3e-56 221.1 168 59.5
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 9.3e-56 221.1 171 62.0
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.2e-55 220.7 167 59.9
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 1.2e-55 220.7 172 57.6
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 1.2e-55 220.7 169 59.8
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.2e-55 220.7 168 58.3
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.6e-55 220.3 169 59.8
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 2.1e-55 219.9 166 60.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 2.1e-55 219.9 168 60.1
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.1e-55 219.9 168 59.5
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 2.7e-55 219.5 169 60.9
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 2.7e-55 219.5 167 61.7
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 2.7e-55 219.5 169 60.4
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.7e-55 219.5 168 60.1
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 3.5e-55 219.2 166 61.4
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 3.5e-55 219.2 166 60.8
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 4.6e-55 218.8 170 59.4
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 4.6e-55 218.8 167 61.1
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 4.6e-55 218.8 167 61.1
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 6.1e-55 218.4 166 61.4
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 7.9e-55 218.0 172 57.0
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 7.9e-55 218.0 167 59.3
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 7.9e-55 218.0 173 59.5
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.0e-54 217.6 170 58.8
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 1.0e-54 217.6 167 59.3
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.0e-54 217.6 172 58.7
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 1.0e-54 217.6 174 56.3
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 1.0e-54 217.6 166 61.4
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 1.0e-54 217.6 169 59.2
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.0e-54 217.6 166 58.4
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 1.3e-54 217.2 166 59.6
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.3e-54 217.2 171 55.6
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.8e-54 216.9 172 58.1
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.8e-54 216.9 167 58.7
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.8e-54 216.9 173 57.8
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.3e-54 216.5 168 58.9
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 2.3e-54 216.5 168 58.9
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.3e-54 216.5 161 63.4
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 2.3e-54 216.5 167 58.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 5.1e-54 215.3 173 57.8
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 6.7e-54 214.9 169 57.4
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 8.7e-54 214.5 169 57.4
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 8.7e-54 214.5 168 56.5
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 8.7e-54 214.5 169 58.6
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 8.7e-54 214.5 169 58.0
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.1e-53 214.2 169 59.8
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.1e-53 214.2 166 59.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 1.5e-53 213.8 166 57.8
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.5e-53 213.8 172 58.1
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.5e-53 213.8 167 58.7
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.5e-53 213.8 167 58.7
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.9e-53 213.4 169 59.2
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.9e-53 213.4 167 57.5
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.9e-53 213.4 170 58.8
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 2.5e-53 213.0 166 60.2
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 3.3e-53 212.6 169 58.0
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 4.3e-53 212.2 168 58.9
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 4.3e-53 212.2 174 56.9
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 4.3e-53 212.2 167 57.5
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 9.7e-53 211.1 172 57.0
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.3e-52 210.7 168 57.7
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.3e-52 210.7 169 56.8
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 1.3e-52 210.7 167 58.1
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 2.2e-52 209.9 180 55.6
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 2.2e-52 209.9 168 60.1
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.8e-52 209.5 170 57.1
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.7e-52 209.1 170 57.6
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 8.2e-52 208.0 169 58.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.8e-51 206.8 178 55.1
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 6.9e-51 204.9 157 58.6
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 6.9e-51 204.9 163 58.3
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 9.0e-51 204.5 169 54.4
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-50 203.4 160 59.4
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-50 203.4 160 59.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.0e-50 203.4 160 59.4
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 2.0e-50 203.4 174 54.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.0e-50 203.4 167 55.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 2.6e-50 203.0 160 59.4
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 5.9e-50 201.8 162 58.6
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 7.7e-50 201.4 154 59.1
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.0e-49 201.1 174 53.4
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-49 200.7 170 55.9
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 3.8e-49 199.1 201 49.3
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 3.8e-49 199.1 162 54.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 5.0e-49 198.7 151 62.3
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 6.5e-49 198.4 157 60.5
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 5.5e-48 195.3 169 53.3
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 9.4e-48 194.5 169 54.4
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 9.4e-48 194.5 173 51.4
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 7.9e-47 191.4 229 43.7
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.4e-46 190.7 161 57.8
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 1.1e-45 187.6 167 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.5e-45 187.2 167 52.1
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 9.7e-45 184.5 175 52.0
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 2.2e-44 183.3 167 50.3
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 2.8e-44 183.0 170 50.0
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 3.7e-44 182.6 172 51.7
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.4e-43 180.6 173 47.4
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 7.7e-42 174.9 168 51.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 2.5e-40 169.9 178 50.6
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 7.0e-35 151.8 109 62.4
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.1e-31 138.7 110 56.4
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 1.0e-30 137.9 125 51.2
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.8e-30 137.1 111 58.6
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.7e-29 132.1 107 57.9
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 9.7e-29 131.3 168 41.7
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 1.3e-28 131.0 100 60.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 1.8e-27 127.1 107 54.2
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 1.8e-27 127.1 107 54.2
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 3.1e-27 126.3 100 59.0
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 3.5e-26 122.9 99 55.6
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 3.5e-26 122.9 107 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.7e-26 121.7 117 53.8
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.3e-25 120.9 162 36.4
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 3.8e-25 119.4 79 77.2
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.2e-23 114.4 168 38.7
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 2.1e-23 113.6 175 40.0
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 3.6e-23 112.8 85 62.4
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 3.5e-18 96.3 149 38.3
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 3.8e-17 92.8 73 53.4
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 9.8e-13 78.2 126 38.9
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 1.3e-12 77.8 179 29.1
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 8.3e-12 75.1 64 53.1
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.8e-11 73.9 63 49.2
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 3.5e-10 69.7 61 47.5
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.9e-09 66.6 80 40.0
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.0e-06 58.2 35 68.6
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 4.0e-06 56.2 68 45.6


User provided reference genes

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