Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 0.0e+00 1586.2 801 100.0
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 4.1e-124 449.9 710 40.3
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.2e-120 438.3 714 38.7
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 5.2e-119 433.0 698 39.8
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.2e-118 431.8 723 38.0
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 4.4e-118 429.9 695 38.3
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 1.7e-117 427.9 697 39.0
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 2.2e-117 427.6 704 38.6
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 3.7e-117 426.8 704 37.5
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 4.8e-117 426.4 703 37.6
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 1.1e-116 425.2 689 38.5
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 1.2e-115 421.8 701 37.5
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 2.0e-115 421.0 702 38.9
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 1.3e-114 418.3 705 37.4
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 1.5e-113 414.8 709 36.8
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 7.2e-113 412.5 692 36.8
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 9.5e-113 412.1 700 36.6
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 1.2e-112 411.8 692 38.0
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 2.1e-112 411.0 697 36.4
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 2.1e-112 411.0 704 37.5
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 2.8e-112 410.6 694 37.8
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 4.7e-112 409.8 696 37.9
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 1.0e-111 408.7 704 37.8
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 3.0e-111 407.1 683 37.0
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 1.5e-110 404.8 700 37.6
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 2.6e-110 404.1 704 36.6
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 5.7e-110 402.9 688 37.1
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 2.8e-109 400.6 701 36.8
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 3.7e-109 400.2 707 35.8
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 6.3e-109 399.4 691 37.6
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 4.1e-108 396.7 697 36.3
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 1.2e-107 395.2 693 36.8
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 4.5e-107 393.3 698 36.4
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 2.3e-106 391.0 685 36.4
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 2.9e-106 390.6 705 36.2
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 5.0e-106 389.8 696 36.8
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 1.1e-105 388.7 700 36.6
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 2.5e-105 387.5 698 35.4
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 5.6e-105 386.3 709 35.0
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 1.0e-103 382.1 695 36.4
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 1.4e-103 381.7 686 35.0
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 3.0e-103 380.6 686 37.3
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 1.2e-102 378.6 700 34.6
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 3.4e-102 377.1 695 36.0
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 5.7e-102 376.3 701 34.7
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 7.5e-102 375.9 696 34.9
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 7.5e-102 375.9 703 35.1
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 7.5e-102 375.9 701 34.7
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 9.8e-102 375.6 687 35.4
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 2.9e-101 374.0 699 34.5
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 3.7e-101 373.6 701 35.4
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 4.9e-101 373.2 692 34.1
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 1.1e-100 372.1 697 35.6
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 1.1e-100 372.1 692 34.2
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 1.4e-100 371.7 621 37.5
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 1.4e-100 371.7 698 34.2
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 1.4e-100 371.7 700 34.1
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 1.8e-100 371.3 709 35.3
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 4.1e-100 370.2 686 36.0
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 7.0e-100 369.4 696 36.6
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 1.6e-99 368.2 701 34.2
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 1.6e-99 368.2 712 35.0
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 5.9e-99 366.3 696 35.6
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 5.9e-99 366.3 691 35.2
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 7.8e-99 365.9 695 34.2
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.7e-98 364.8 690 34.1
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 3.9e-98 363.6 706 34.3
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 8.6e-98 362.5 702 34.2
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 7.3e-97 359.4 612 37.9
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 3.6e-96 357.1 709 33.9
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 6.2e-96 356.3 709 33.6
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.1e-95 355.5 596 37.8
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 2.3e-95 354.4 697 35.2
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 4.0e-95 353.6 636 35.5
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 4.4e-94 350.1 696 34.3
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 9.8e-94 349.0 699 32.5
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 2.9e-93 347.4 706 34.1
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 3.2e-92 344.0 698 33.0
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 4.1e-92 343.6 700 33.0
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 2.0e-91 341.3 697 32.6
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 3.0e-90 337.4 705 33.8
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 3.9e-90 337.0 704 31.7
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 8.6e-90 335.9 691 33.0
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 3.3e-89 334.0 697 31.7
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 2.1e-88 331.3 698 33.2
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 2.1e-88 331.3 691 32.6
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 2.8e-88 330.9 692 32.1
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 3.6e-88 330.5 594 35.9
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 5.2e-87 326.6 682 32.8
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 9.9e-86 322.4 738 33.3
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 7.3e-81 306.2 627 33.0
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 6.2e-80 303.1 588 34.2
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 1.1e-79 302.4 706 30.2
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 3.1e-79 300.8 585 34.9
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 1.2e-78 298.9 683 31.3
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.4e-78 297.0 681 30.8
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 7.6e-78 296.2 704 31.7
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 6.4e-77 293.1 622 30.9
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 5.4e-76 290.0 594 33.2
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 4.3e-73 280.4 546 33.7
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 2.8e-72 277.7 723 30.4
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 1.2e-70 272.3 291 50.2
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 1.2e-70 272.3 295 50.5
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 6.0e-67 260.0 711 28.4
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 1.6e-59 235.3 290 43.8
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 3.0e-58 231.1 526 32.1
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 8.1e-56 223.0 303 42.9
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 1.7e-53 215.3 214 50.9
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 3.2e-52 211.1 698 27.7
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 2.3e-50 204.9 194 53.1
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 8.2e-48 196.4 691 26.6
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 2.9e-45 188.0 204 48.0
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 2.5e-41 174.9 628 25.6
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 9.0e-39 166.4 192 47.9
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 2.9e-37 161.4 215 41.9
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 5.7e-33 147.1 199 40.7
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 3.4e-30 137.9 216 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.3e-29 136.0 484 25.2
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 3.2e-28 131.3 590 24.1
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 2.7e-27 128.3 594 25.8
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 2.6e-25 121.7 97 58.8
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 4.1e-23 114.4 124 47.6
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 9.1e-23 113.2 111 50.5
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 7.7e-22 110.2 102 55.9
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.0e-21 109.8 102 54.9
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.0e-21 109.8 99 54.5
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 1.3e-21 109.4 233 33.0
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 1.7e-21 109.0 91 56.0
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 2.9e-21 108.2 224 34.4
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 5.0e-21 107.5 224 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 3.3e-17 94.7 132 42.4
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.4e-15 89.4 71 59.2
CSS0015528 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.0e-13 83.2 76 55.3
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.2e-13 82.0 63 61.9
SEGI_29343 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 6.5e-13 80.5 96 45.8
AagrBONN_evm.TU.Sc2ySwM_344.1682 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.6e-11 75.9 106 45.3
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 4.7e-11 74.3 59 59.3
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 3.0e-10 71.6 50 60.0
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.2e-09 69.7 49 65.3
Os09g0411650 Oryza sativa ssp. japonica HOM05D005456 ORTHO05D006805 4.1e-07 61.2 189 27.5
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.5e-06 58.2 44 61.4
Nitab4.5_0000391g0340 Nicotiana tabacum HOM05D005456 ORTHO05D006805 7.7e-06 57.0 215 25.1
PGSC0003DMG400028394 Solanum tuberosum HOM05D005456 ORTHO05D006805 7.7e-06 57.0 192 24.5


User provided reference genes

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