Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.5e-278 962.2 478 100.0
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.7e-197 691.8 496 69.8
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.3e-196 688.0 497 68.8
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.8e-194 681.8 498 68.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.0e-190 669.5 496 66.9
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.0e-190 669.5 496 66.9
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 5.7e-190 667.9 498 67.3
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 9.7e-190 667.2 498 65.5
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.7e-189 666.4 498 66.5
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.8e-189 665.6 498 65.1
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 2.8e-189 665.6 509 65.6
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 4.8e-189 664.8 497 66.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.1e-188 663.7 491 67.2
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.1e-188 661.8 497 67.0
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 9.1e-188 660.6 524 63.9
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.6e-187 659.8 498 66.7
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 5.9e-187 657.9 497 66.8
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.0e-186 657.1 497 67.2
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.7e-186 656.4 497 66.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.9e-186 655.6 497 64.8
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.0e-186 654.8 497 66.0
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.5e-186 654.4 500 64.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 8.5e-186 654.1 499 65.7
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.6e-184 648.7 490 65.1
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 6.1e-184 647.9 498 65.5
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 8.0e-184 647.5 503 63.4
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-183 647.1 502 63.5
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.4e-183 646.7 490 64.5
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 3.0e-183 645.6 487 66.9
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.2e-182 643.7 498 64.9
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.5e-182 643.3 494 64.4
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 3.4e-182 642.1 514 62.1
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 4.4e-182 641.7 497 65.0
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 2.2e-181 639.4 498 65.1
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.2e-181 639.4 487 65.1
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.2e-181 639.4 503 64.0
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.2e-181 639.4 498 63.9
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.8e-181 639.0 495 63.8
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-180 637.1 505 64.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.4e-180 636.7 495 63.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.8e-180 636.3 496 63.7
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 4.1e-180 635.2 483 65.4
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 5.4e-180 634.8 498 64.3
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 7.0e-180 634.4 497 64.8
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.1e-180 634.0 494 63.8
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.2e-179 633.6 498 65.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.6e-179 633.3 487 64.5
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.0e-179 632.9 498 63.5
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.5e-179 632.1 497 64.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.5e-179 631.7 492 64.2
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.0e-178 630.6 494 63.8
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.0e-178 630.6 493 64.7
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.7e-178 629.8 496 62.7
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 2.2e-178 629.4 499 63.5
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.2e-178 629.4 492 64.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.8e-178 628.6 504 62.9
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 5.0e-178 628.2 492 64.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.5e-178 627.9 490 64.5
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.5e-178 627.9 498 63.5
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.5e-177 626.7 500 63.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-177 625.5 535 59.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.2e-177 625.5 497 63.6
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.2e-177 625.5 491 64.0
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 3.2e-177 625.5 490 63.3
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.5e-177 624.8 499 62.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 7.2e-177 624.4 490 63.7
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 7.2e-177 624.4 497 62.8
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 9.4e-177 624.0 494 62.3
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 9.4e-177 624.0 498 63.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 9.4e-177 624.0 500 63.4
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.4e-177 624.0 497 62.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.2e-176 623.6 487 63.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.2e-176 623.6 487 63.2
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.1e-176 622.9 492 63.2
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.7e-176 622.5 487 62.4
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.1e-176 621.3 499 61.9
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 8.0e-176 620.9 498 61.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.8e-175 619.8 487 62.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.3e-175 619.4 586 56.8
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 3.0e-175 619.0 487 62.6
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.0e-175 619.0 495 62.4
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.3e-173 613.6 491 62.3
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 3.7e-173 612.1 492 62.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 3.7e-173 612.1 491 62.5
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 8.3e-173 610.9 493 62.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 5.4e-172 608.2 493 62.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 9.1e-172 607.4 511 59.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 3.5e-171 605.5 493 64.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-170 604.0 503 61.6
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 7.2e-169 597.8 510 59.4
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 2.8e-168 595.9 492 63.2
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.6e-168 595.5 500 60.4
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.1e-168 594.7 463 62.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.0e-168 594.3 494 60.3
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.4e-167 593.6 493 61.7
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-166 590.5 526 56.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.7e-166 588.2 508 60.0
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 4.9e-165 585.1 461 63.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.6e-163 580.1 488 59.0
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 3.5e-163 578.9 489 58.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 5.9e-163 578.2 434 63.8
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 5.9e-163 578.2 533 59.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.5e-161 572.8 490 57.6
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 7.3e-161 571.2 480 61.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.2e-158 563.9 448 63.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 3.7e-157 558.9 487 58.5
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.5e-155 552.4 420 64.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 6.0e-155 551.6 448 60.9
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.7e-154 550.1 500 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.8e-150 535.0 505 54.9
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.4e-149 531.6 487 56.9
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 9.5e-145 517.7 507 54.6
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.1e-143 514.2 482 54.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 5.2e-143 511.9 552 52.0
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 8.1e-136 488.0 443 58.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.0e-135 485.7 373 68.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.5e-134 483.8 497 51.9
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.0e-131 471.9 418 58.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 8.7e-114 414.8 497 47.1
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 5.3e-95 352.4 256 68.8
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.9e-92 344.0 597 37.5
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 7.2e-84 315.5 273 57.9
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 6.7e-82 308.9 537 37.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.1e-79 301.6 213 72.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.3e-69 268.1 541 36.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.2e-69 267.3 181 64.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.0e-63 245.7 183 72.1
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 2.2e-61 240.7 285 47.4
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.5e-60 235.3 171 61.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.7e-59 233.0 229 52.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.3e-56 224.9 256 49.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 9.2e-55 218.8 269 45.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 5.9e-46 189.5 425 32.7
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 6.8e-42 176.0 441 32.4
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.1e-39 168.7 167 50.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.2e-35 155.2 399 30.3
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.1e-34 150.6 444 27.9
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.8e-30 136.0 440 24.5
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.0e-26 123.6 165 38.2
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-24 118.6 182 44.5
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-21 107.1 211 34.6
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.8e-16 90.5 65 72.3
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.2e-14 85.5 65 73.8
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.7e-14 84.3 65 69.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 5.8e-09 66.6 69 55.1
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 9.9e-09 65.9 68 55.9
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.9e-08 63.5 51 45.1
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.2e-07 60.8 83 47.0
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 6.0e-06 56.6 63 49.2


User provided reference genes

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