Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 1.7e-27 125.2 60 100.0
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.0e-19 97.8 54 85.2
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 8.6e-19 96.3 54 81.5
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 8.6e-19 96.3 54 81.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 1.5e-18 95.5 54 81.5
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 1.5e-18 95.5 54 81.5
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 1.9e-18 95.1 54 81.5
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 3.3e-18 94.4 54 79.6
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 4.3e-18 94.0 54 79.6
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 7.3e-18 93.2 54 81.5
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 9.5e-18 92.8 54 77.8
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 9.5e-18 92.8 54 79.6
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 9.5e-18 92.8 54 79.6
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.2e-17 92.4 54 79.6
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 1.2e-17 92.4 54 79.6
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 2.8e-17 91.3 54 75.9
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 2.8e-17 91.3 54 75.9
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 4.7e-17 90.5 54 79.6
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 4.7e-17 90.5 54 79.6
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 4.7e-17 90.5 50 82.0
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 4.7e-17 90.5 50 82.0
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 4.7e-17 90.5 54 77.8
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 4.7e-17 90.5 54 75.9
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 6.2e-17 90.1 54 79.6
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 6.2e-17 90.1 54 77.8
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 6.2e-17 90.1 54 75.9
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 8.1e-17 89.7 54 79.6
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 8.1e-17 89.7 54 79.6
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 8.1e-17 89.7 50 80.0
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 1.4e-16 89.0 53 77.4
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 1.4e-16 89.0 53 77.4
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 1.4e-16 89.0 50 84.0
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 1.8e-16 88.6 54 77.8
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 1.8e-16 88.6 54 79.6
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 1.8e-16 88.6 54 79.6
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 1.8e-16 88.6 54 79.6
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 1.8e-16 88.6 50 82.0
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 2.3e-16 88.2 54 77.8
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 2.3e-16 88.2 54 77.8
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 2.3e-16 88.2 54 75.9
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 3.1e-16 87.8 50 80.0
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 79.6
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 53 75.5
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 53 75.5
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 3.1e-16 87.8 50 82.0
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 3.1e-16 87.8 54 77.8
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 4.0e-16 87.4 54 77.8
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 4.0e-16 87.4 54 77.8
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 4.0e-16 87.4 50 80.0
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 4.0e-16 87.4 53 77.4
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 4.0e-16 87.4 53 77.4
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 4.0e-16 87.4 54 77.8
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 5.2e-16 87.0 50 80.0
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 5.2e-16 87.0 50 80.0
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 5.2e-16 87.0 50 82.0
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 5.2e-16 87.0 50 80.0
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 6.8e-16 86.7 54 77.8
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 6.8e-16 86.7 54 75.9
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 8.9e-16 86.3 54 77.8
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 8.9e-16 86.3 54 74.1
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 8.9e-16 86.3 53 75.5
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.5e-15 85.5 49 81.6
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 1.5e-15 85.5 50 80.0
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 2.0e-15 85.1 43 95.3
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 2.0e-15 85.1 49 81.6
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 2.6e-15 84.7 50 80.0
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 2.6e-15 84.7 54 74.1
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 2.6e-15 84.7 49 83.7
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 3.4e-15 84.3 49 83.7
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 4.4e-15 84.0 50 78.0
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 4.4e-15 84.0 50 80.0
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 4.4e-15 84.0 51 78.4
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 5.8e-15 83.6 52 76.9
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 5.8e-15 83.6 50 78.0
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 5.8e-15 83.6 50 78.0
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 5.8e-15 83.6 50 78.0
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 5.8e-15 83.6 54 70.4
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 7.5e-15 83.2 53 75.5
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 9.8e-15 82.8 50 78.0
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 9.8e-15 82.8 42 95.2
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 1.3e-14 82.4 44 90.9
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 1.3e-14 82.4 50 78.0
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 1.3e-14 82.4 45 86.7
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.3e-14 82.4 44 90.9
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 1.7e-14 82.0 54 72.2
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 1.7e-14 82.0 49 79.6
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 2.2e-14 81.6 44 86.4
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 2.2e-14 81.6 50 78.0
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 2.2e-14 81.6 50 74.0
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 2.2e-14 81.6 45 86.7
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 2.2e-14 81.6 50 78.0
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 2.9e-14 81.3 44 88.6
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-14 80.9 49 79.6
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 3.7e-14 80.9 45 86.7
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 3.7e-14 80.9 42 90.5
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 47 78.7
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-14 80.5 53 73.6
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 4.9e-14 80.5 49 79.6
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 4.9e-14 80.5 44 88.6
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 6.4e-14 80.1 49 77.6
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 6.4e-14 80.1 49 77.6
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 6.4e-14 80.1 49 77.6
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 6.4e-14 80.1 42 90.5
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 6.4e-14 80.1 43 86.0
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 6.4e-14 80.1 42 90.5
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 6.4e-14 80.1 49 77.6
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 6.4e-14 80.1 42 90.5
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 8.3e-14 79.7 42 90.5
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 1.1e-13 79.3 44 86.4
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-13 79.0 53 71.7
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-13 79.0 53 69.8
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 1.4e-13 79.0 53 71.7
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.9e-13 78.6 49 77.6
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 2.4e-13 78.2 41 90.2
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.4e-13 78.2 42 88.1
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.4e-13 78.2 42 88.1
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 2.4e-13 78.2 53 71.7
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 4.1e-13 77.4 49 75.5
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 4.1e-13 77.4 49 73.5
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 5.4e-13 77.0 45 82.2
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 7.1e-13 76.6 53 71.7
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 7.1e-13 76.6 53 71.7
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 9.2e-13 76.3 44 84.1
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 1.6e-12 75.5 42 88.1
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 2.7e-12 74.7 42 88.1
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 6.0e-12 73.6 44 79.5
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 1.0e-11 72.8 42 85.7
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 2.3e-11 71.6 36 94.4
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 6.6e-11 70.1 38 84.2
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.1e-10 69.3 44 81.8
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.2e-09 65.9 44 79.5
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 3.6e-09 64.3 38 78.9
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 1.8e-08 62.0 42 73.8
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 6.8e-08 60.1 47 61.7
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 8.9e-08 59.7 39 74.4
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.6e-07 58.2 38 73.7


User provided reference genes

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