Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24409 Sapria himalayana HOM05D001249 ORTHO05D003440 7.1e-29 129.8 61 100.0
SHI51788 Sapria himalayana HOM05D001249 ORTHO05D003440 3.0e-19 97.8 83 60.2
SHI01299 Sapria himalayana HOM05D001249 ORTHO05D003440 9.7e-18 92.8 83 60.2
SHI34456 Sapria himalayana HOM05D001249 ORTHO05D003440 2.8e-17 91.3 83 57.8
SHI50079 Sapria himalayana HOM05D001249 ORTHO05D003440 8.2e-17 89.7 83 56.6
SHI13210 Sapria himalayana HOM05D001249 ORTHO05D003440 4.1e-16 87.4 83 56.6
SHI33111 Sapria himalayana HOM05D001249 ORTHO05D003440 2.0e-15 85.1 83 56.6
SHI22067 Sapria himalayana HOM05D001249 ORTHO05D003440 2.6e-15 84.7 69 62.3
SHI50201 Sapria himalayana HOM05D001249 ORTHO05D003440 1.6e-12 75.5 43 79.1
SHI51633 Sapria himalayana HOM05D001249 ORTHO05D003440 1.6e-12 75.5 77 51.9
SHI32247 Sapria himalayana HOM05D001249 ORTHO05D003440 6.1e-12 73.6 43 81.4
SHI53105 Sapria himalayana HOM05D001249 ORTHO05D003440 6.1e-12 73.6 43 76.7
MD15G1142200 Malus domestica HOM05D001249 ORTHO05D003440 5.7e-10 67.0 79 45.6
CANSAT56G2692 Cannabis sativa HOM05D001249 ORTHO05D003440 7.4e-10 66.6 79 44.3
Nn1g09415 Nelumbo nucifera HOM05D001249 ORTHO05D003440 9.7e-10 66.2 79 44.3
CiPaw.02G125500 Carya illinoinensis HOM05D001249 ORTHO05D003440 1.7e-09 65.5 79 43.0
Eucgr.H00245 Eucalyptus grandis HOM05D001249 ORTHO05D003440 1.7e-09 65.5 79 45.6
Lju470C1T4 Lonicera japonica HOM05D001249 ORTHO05D003440 2.2e-09 65.1 79 44.3
Potri.007G146300 Populus trichocarpa HOM05D001249 ORTHO05D003440 2.8e-09 64.7 79 41.8
SHI15069 Sapria himalayana HOM05D001249 ORTHO05D003440 2.8e-09 64.7 73 50.7
Aqoxy6G00001 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 3.7e-09 64.3 79 41.8
COL.COLO4_32523 Corchorus olitorius HOM05D001249 ORTHO05D003440 3.7e-09 64.3 79 43.0
TWI63G1312 Tripterygium wilfordii HOM05D001249 ORTHO05D003440 3.7e-09 64.3 79 44.3
CDE04G1507 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 4.8e-09 63.9 79 40.5
Cc03_g16190 Coffea canephora HOM05D001249 ORTHO05D003440 4.8e-09 63.9 79 41.8
Dinv24741 Davidia involucrata HOM05D001249 ORTHO05D003440 4.8e-09 63.9 79 41.8
QL10p064899 Quercus lobata HOM05D001249 ORTHO05D003440 4.8e-09 63.9 79 43.0
MSTRG.8086 Avicennia marina HOM05D001249 ORTHO05D003440 6.3e-09 63.5 79 41.8
Duzib093G0930 Durio zibethinus HOM05D001249 ORTHO05D003440 6.3e-09 63.5 79 41.8
SGA_v2.0_scaffold37G14908 Striga asiatica HOM05D001249 ORTHO05D003440 6.3e-09 63.5 79 43.0
Lalb_Chr10g0106081 Lupinus albus HOM05D001249 ORTHO05D003440 8.2e-09 63.2 79 44.3
Cfa008531 Carpinus fangiana HOM05D001249 ORTHO05D003440 1.1e-08 62.8 79 41.8
Ciclev10020871m.g Citrus clementina HOM05D001249 ORTHO05D003440 1.1e-08 62.8 79 40.5
Gohir.A03G218500 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.1e-08 62.8 79 41.8
PGR142G4250 Punica granatum HOM05D001249 ORTHO05D003440 1.1e-08 62.8 79 39.2
Cpa.g.sc9.242 Carica papaya HOM05D001249 ORTHO05D003440 1.4e-08 62.4 79 43.0
THA.LOC104802350 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 1.4e-08 62.4 79 40.5
SHI23769 Sapria himalayana HOM05D001249 ORTHO05D003440 1.8e-08 62.0 71 47.9
GSVIVG01038264001 Vitis vinifera HOM05D001249 ORTHO05D003440 1.8e-08 62.0 79 41.8
Atru.chr3.1961 Acer truncatum HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 2.4e-08 61.6 79 39.2
Lj6g0018713 Lotus japonicus HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
QL10p064706 Quercus lobata HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
QL10p064865 Quercus lobata HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
QL10p065831 Quercus lobata HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
Sed0022992 Sechium edule HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 39.2
vmacro00731 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
vmacro03772 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 2.4e-08 61.6 79 41.8
arahy.Tifrunner.gnm1.ann1.L9LT8B Arachis hypogaea HOM05D001249 ORTHO05D003440 3.1e-08 61.2 79 41.8
CAN.G68.1 Capsicum annuum HOM05D001249 ORTHO05D003440 3.1e-08 61.2 79 43.0
AUR62002497 Chenopodium quinoa HOM05D001249 ORTHO05D003440 3.1e-08 61.2 49 59.2
FAN26G0381 Fragaria x ananassa HOM05D001249 ORTHO05D003440 3.1e-08 61.2 79 40.5
RcHm_v2.0_Chr2g0084381 Rosa chinensis HOM05D001249 ORTHO05D003440 3.1e-08 61.2 79 40.5
arahy.Tifrunner.gnm1.ann1.R434E2 Arachis hypogaea HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 40.5
AUR62023689 Chenopodium quinoa HOM05D001249 ORTHO05D003440 4.1e-08 60.8 49 57.1
ClCG06G010080 Citrullus lanatus HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 38.0
MELO3C020416.2 Cucumis melo HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 38.0
Glyma.20G044800 Glycine max HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 39.2
Medtr3g045190 Medicago truncatula HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 40.5
Peaxi162Scf00057g01912 Petunia axillaris HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 41.8
Peaxi162Scf63976g00001 Petunia axillaris HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 41.8
Prupe.7G271000 Prunus persica HOM05D001249 ORTHO05D003440 4.1e-08 60.8 79 40.5
Ca_26658_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 38.0
CsaV3_2G011930 Cucumis sativus L. HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 38.0
FvH4_1g00090 Fragaria vesca HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
FAN28G2707 Fragaria x ananassa HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
Gohir.A01G231800 Gossypium hirsutum HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
Gohir.D01G221900 Gossypium hirsutum HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
Gorai.002G268600 Gossypium raimondii HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
VMungo0647G1653 Vigna mungo HOM05D001249 ORTHO05D003440 5.3e-08 60.5 79 40.5
Ah.07g203310 Amaranthus hybridus HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 43.0
CSS0028444 Camellia sinensis var. sinensis HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 41.8
Glyma.02G277300 Glycine max HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 39.2
Glyma.14G037300 Glycine max HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 39.2
Lalb_Chr15g0080151 Lupinus albus HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 41.8
Thecc.05G000700 Theobroma cacao HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 40.5
TPR.G11914 Trifolium pratense HOM05D001249 ORTHO05D003440 6.9e-08 60.1 79 39.2
Lsat_1_v5_gn_1_82580 Lactuca sativa HOM05D001249 ORTHO05D003440 9.1e-08 59.7 79 38.0
Manes.05G208200 Manihot esculenta HOM05D001249 ORTHO05D003440 9.1e-08 59.7 79 38.0
PGSC0003DMG400013715 Solanum tuberosum HOM05D001249 ORTHO05D003440 9.1e-08 59.7 79 41.8
EL10Ac3g06181 Beta vulgaris HOM05D001249 ORTHO05D003440 1.2e-07 59.3 79 40.5
HanXRQChr01g0017591 Helianthus annuus HOM05D001249 ORTHO05D003440 1.2e-07 59.3 79 38.0
Os03g0843300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 1.2e-07 59.3 79 40.5
Sabra07G0115100 Salix brachista HOM05D001249 ORTHO05D003440 1.2e-07 59.3 79 40.5
HPP92_001207 Vanilla planifolia HOM05D001249 ORTHO05D003440 1.2e-07 59.3 79 40.5
MD02G1000600 Malus domestica HOM05D001249 ORTHO05D003440 1.5e-07 58.9 49 57.1
Nitab4.5_0005148g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.5e-07 58.9 79 40.5
SGA_v2.0_scaffold12G06226 Striga asiatica HOM05D001249 ORTHO05D003440 1.5e-07 58.9 79 39.2
THA.LOC104804361 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 1.5e-07 58.9 79 39.2
CiPaw.01G202900 Carya illinoinensis HOM05D001249 ORTHO05D003440 2.0e-07 58.5 79 39.2
DCAR_027489 Daucus carota HOM05D001249 ORTHO05D003440 2.0e-07 58.5 79 38.0
Nitab4.5_0003681g0020 Nicotiana tabacum HOM05D001249 ORTHO05D003440 2.0e-07 58.5 79 40.5
Oeu014978.1 Olea europaea HOM05D001249 ORTHO05D003440 2.0e-07 58.5 79 39.2
Sc25g0002220 Simmondsia chinensis HOM05D001249 ORTHO05D003440 2.0e-07 58.5 79 39.2
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 2.0e-07 58.5 79 39.2
Aqoxy6G00880 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 2.6e-07 58.2 79 36.7
LjContig00564g0000582 Lotus japonicus HOM05D001249 ORTHO05D003440 2.6e-07 58.2 79 40.5
Zm00001eb064120 Zea mays HOM05D001249 ORTHO05D003440 2.6e-07 58.2 79 40.5
ECA248G2519 Erigeron canadensis HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 38.0
Lju124C5T8 Lonicera japonica HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 38.0
Lalb_Chr04g0249331 Lupinus albus HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 40.5
Phvul.006G018100 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 38.0
Phvul.008G203600 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 38.0
VMungo0540G2213 Vigna mungo HOM05D001249 ORTHO05D003440 3.4e-07 57.8 79 38.0
TPR.G16415 Trifolium pratense HOM05D001249 ORTHO05D003440 4.5e-07 57.4 79 39.2
Carub.0004s2661 Capsella rubella HOM05D001249 ORTHO05D003440 5.9e-07 57.0 79 35.4
CARHR139220 Cardamine hirsuta HOM05D001249 ORTHO05D003440 5.9e-07 57.0 79 35.4
CDE09G1295 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 5.9e-07 57.0 79 38.0
Solyc08g015690.4 Solanum lycopersicum HOM05D001249 ORTHO05D003440 5.9e-07 57.0 79 39.2
Sopen08g005800 Solanum pennellii HOM05D001249 ORTHO05D003440 5.9e-07 57.0 79 39.2
ATR0225G022 Amborella trichopoda HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 38.0
ATR0743G044 Amborella trichopoda HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 36.7
AL4G42930 Arabidopsis lyrata HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
A03p24660 Brassica napus HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
C03p29400 Brassica napus HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
BolC3t15287H Brassica oleracea HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
BraA03t11672Z Brassica rapa HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
MBI07_g27882_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 38.0
Medtr5g088850 Medicago truncatula HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 38.0
Nitab4.5_0000348g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 39.2
Peaxi162Scf01205g00175 Petunia axillaris HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 39.2
SalBow6G0898 Salvia bowleyana HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 39.2
Sp4g26140 Schrenkiella parvula HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 35.4
TAR362G1111 Trochodendron aralioides HOM05D001249 ORTHO05D003440 7.7e-07 56.6 79 38.0
Migut.N03015 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.0e-06 56.2 79 38.0
AT2G44060 Arabidopsis thaliana HOM05D001249 ORTHO05D003440 1.3e-06 55.8 79 34.2
Ca_06180_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 1.3e-06 55.8 79 39.2
DCAR_023793 Daucus carota HOM05D001249 ORTHO05D003440 1.3e-06 55.8 79 39.2
Thhalv10001537m.g Eutrema salsugineum HOM05D001249 ORTHO05D003440 1.7e-06 55.5 79 34.2
BcaB06g29354 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 35.4
A04p33180 Brassica napus HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 35.4
BraA04t18777Z Brassica rapa HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 35.4
Migut.G00799 Erythranthe guttata HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 39.2
PSO675G8641 Papaver somniferum HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 35.4
SEGI_02724 Sequoiadendron giganteum HOM05D001249 ORTHO05D003440 2.2e-06 55.1 79 35.4
BcaB01g03333 Brassica carinata HOM05D001249 ORTHO05D003440 2.9e-06 54.7 79 34.2
Gohir.A07G233300 Gossypium hirsutum HOM05D001249 ORTHO05D003440 3.8e-06 54.3 39 56.4
arahy.Tifrunner.gnm1.ann1.4U54KW Arachis hypogaea HOM05D001249 ORTHO05D003440 5.0e-06 53.9 79 35.4
arahy.Tifrunner.gnm1.ann1.GD18YF Arachis hypogaea HOM05D001249 ORTHO05D003440 5.0e-06 53.9 79 35.4
BcaB06g29513 Brassica carinata HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 34.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 34.2
BolC4t28588H Brassica oleracea HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 34.2
ECA233G0816 Erigeron canadensis HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 32.9
PSO541G5475 Papaver somniferum HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 34.2
TAR376G0188 Trochodendron aralioides HOM05D001249 ORTHO05D003440 6.5e-06 53.5 79 34.2
Aa31LG1G25730 Aethionema arabicum HOM05D001249 ORTHO05D003440 8.5e-06 53.1 79 32.9


User provided reference genes

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