Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.8e-117 426.0 234 100.0
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.1e-32 142.9 155 51.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 3.5e-31 139.4 123 54.5
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 3.8e-30 136.0 129 54.3
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 5.5e-29 132.1 122 52.5
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 9.4e-29 131.3 129 53.5
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.2e-28 131.0 133 48.9
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.6e-28 130.6 136 50.0
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 8.8e-27 124.8 133 48.9
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 8.8e-27 124.8 134 49.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 8.8e-27 124.8 130 47.7
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.0e-26 123.6 133 46.6
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.6e-26 123.2 134 47.8
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.3e-26 122.9 134 47.8
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.7e-26 122.1 134 47.8
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 5.7e-26 122.1 134 49.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.7e-26 122.1 134 49.3
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.7e-26 122.1 134 49.3
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 7.5e-26 121.7 134 47.8
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.7e-25 120.6 124 50.0
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.7e-25 120.6 135 46.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 1.7e-25 120.6 133 47.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.8e-25 119.8 134 47.8
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.8e-25 119.8 134 47.8
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 3.7e-25 119.4 125 50.4
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 3.7e-25 119.4 133 48.1
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.7e-25 119.4 133 46.6
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.7e-25 119.4 132 47.0
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 4.8e-25 119.0 132 48.5
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.8e-25 119.0 133 47.4
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 4.8e-25 119.0 117 53.8
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 8.2e-25 118.2 134 47.8
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.1e-24 117.9 135 44.4
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.4e-24 117.5 133 46.6
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.8e-24 117.1 133 45.1
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.4e-24 116.7 133 45.9
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.2e-23 114.4 133 46.6
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.2e-23 114.4 134 45.5
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.2e-23 114.4 133 45.9
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.2e-23 114.4 129 42.6
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.6e-23 114.0 133 44.4
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.0e-23 113.6 124 48.4
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 2.0e-23 113.6 135 43.7
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 2.0e-23 113.6 133 44.4
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.0e-23 113.6 133 44.4
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.7e-23 113.2 133 46.6
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.7e-23 113.2 133 43.6
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 2.7e-23 113.2 127 44.9
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 2.7e-23 113.2 129 43.4
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.7e-23 113.2 133 46.6
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.5e-23 112.8 149 42.3
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.5e-23 112.8 134 44.0
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 4.5e-23 112.5 133 44.4
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 7.7e-23 111.7 150 44.0
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 7.7e-23 111.7 136 45.6
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 7.7e-23 111.7 133 43.6
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.0e-22 111.3 133 44.4
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-22 110.9 119 48.7
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-22 110.9 124 47.6
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 2.2e-22 110.2 134 44.8
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-22 109.8 133 45.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.9e-22 109.8 133 46.6
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.9e-22 109.8 124 47.6
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.0e-22 109.0 134 45.5
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.0e-22 109.0 128 45.3
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 6.5e-22 108.6 134 41.8
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 6.5e-22 108.6 134 41.8
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.5e-22 108.6 134 42.5
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 8.5e-22 108.2 128 46.1
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.1e-21 107.8 124 46.8
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.9e-21 107.1 136 44.1
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.5e-21 106.7 133 41.4
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.5e-21 106.7 132 43.9
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 4.2e-21 105.9 126 44.4
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.2e-21 105.9 136 44.1
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 4.2e-21 105.9 134 44.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 5.5e-21 105.5 127 44.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.5e-21 105.5 134 45.5
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.5e-21 105.5 135 45.9
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 5.5e-21 105.5 135 45.9
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.5e-21 105.5 136 43.4
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 7.2e-21 105.1 135 45.9
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 7.2e-21 105.1 135 44.4
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.2e-20 104.4 135 45.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-20 104.4 167 38.3
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-20 103.6 132 44.7
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.7e-20 103.2 135 43.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 3.6e-20 102.8 131 45.0
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 3.6e-20 102.8 119 47.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.6e-20 102.8 137 41.6
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 4.7e-20 102.4 132 43.9
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 4.7e-20 102.4 132 43.9
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.7e-20 102.4 133 42.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 6.1e-20 102.1 132 43.2
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 8.0e-20 101.7 132 43.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.0e-19 101.3 137 40.9
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.4e-19 100.9 117 45.3
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 5.2e-19 99.0 133 42.1
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 5.2e-19 99.0 132 42.4
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.2e-18 97.8 133 42.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.2e-18 97.8 123 45.5
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.2e-18 97.8 133 42.1
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 3.4e-18 96.3 163 35.6
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 4.8e-17 92.4 132 37.9
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.1e-16 89.4 123 38.2
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 5.4e-16 89.0 125 40.8
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.6e-15 87.4 128 37.5
SHI16273 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-15 87.4 122 51.6
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.0e-15 87.0 128 38.3
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 2.0e-15 87.0 128 38.3
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.0e-15 87.0 137 38.0
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.5e-13 80.9 127 37.0
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.5e-13 80.1 122 36.9
SHI26361 Sapria himalayana HOM05D026459 ORTHO05D004268 4.2e-13 79.3 96 56.2
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 4.7e-12 75.9 62 53.2
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 4.7e-12 75.9 62 53.2
SHI17526 Sapria himalayana HOM05D004343 ORTHO05D005695 8.0e-12 75.1 137 47.4
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.2e-11 72.4 132 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.5e-10 70.9 123 36.6
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 7.5e-10 68.6 75 45.3
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.8e-09 66.6 127 34.6
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 2.8e-09 66.6 127 34.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.7e-09 66.2 48 56.2
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.3e-09 65.5 89 41.6
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.1e-08 64.7 43 62.8
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 2.4e-08 63.5 89 42.7
SHI21003 Sapria himalayana HOM05D000629 ORTHO05D016154 3.1e-08 63.2 76 51.3
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 4.1e-08 62.8 53 58.5
SHI31781 Sapria himalayana HOM05D004581 ORTHO05D006211 4.1e-08 62.8 104 46.2
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 9.2e-08 61.6 89 41.6
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.6e-07 60.8 151 29.8
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.7e-07 60.1 43 60.5
SHI37967 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-07 59.7 71 57.7
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 4.5e-07 59.3 44 56.8
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 5.9e-07 58.9 44 56.8
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 5.9e-07 58.9 44 56.8
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.0e-06 58.2 83 39.8
SHI27594 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-06 58.2 61 62.3
SHI22250 Sapria himalayana HOM05D000023 ORTHO05D007588 2.9e-06 56.6 76 51.3
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 8.6e-06 55.1 44 54.5


User provided reference genes

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