Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24270 Sapria himalayana HOM05D000518 ORTHO05D000737 7.5e-58 227.3 140 100.0
Zm00001eb135590 Zea mays HOM05D000518 ORTHO05D000737 9.3e-24 114.0 146 46.6
CSS0006684 Camellia sinensis var. sinensis HOM05D000518 ORTHO05D000737 1.6e-23 113.2 146 46.6
TAR636G2928 Trochodendron aralioides HOM05D000518 ORTHO05D000737 1.6e-23 113.2 146 45.9
Ciclev10013931m.g Citrus clementina HOM05D000518 ORTHO05D000737 2.1e-23 112.8 146 46.6
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.7e-23 112.5 146 47.3
Sc12g0011360 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.7e-23 112.5 146 47.3
Zm00001eb031220 Zea mays HOM05D000518 ORTHO05D000737 2.7e-23 112.5 146 45.9
arahy.Tifrunner.gnm1.ann1.35JPC8 Arachis hypogaea HOM05D000518 ORTHO05D000737 3.5e-23 112.1 146 47.3
arahy.Tifrunner.gnm1.ann1.G1ZWS1 Arachis hypogaea HOM05D000518 ORTHO05D000737 3.5e-23 112.1 146 47.3
THA.LOC104808107 Tarenaya hassleriana HOM05D000518 ORTHO05D000737 3.5e-23 112.1 146 45.9
Eucgr.J03186 Eucalyptus grandis HOM05D000518 ORTHO05D000737 4.6e-23 111.7 146 47.3
PGR031G2391 Punica granatum HOM05D000518 ORTHO05D000737 4.6e-23 111.7 146 47.3
Sabra08G0001300 Salix brachista HOM05D000518 ORTHO05D000737 4.6e-23 111.7 146 46.6
GSVIVG01029563001 Vitis vinifera HOM05D000518 ORTHO05D000737 4.6e-23 111.7 146 46.6
Ah.08g217850 Amaranthus hybridus HOM05D000518 ORTHO05D000737 6.0e-23 111.3 146 45.2
HanXRQChr05g0129041 Helianthus annuus HOM05D000518 ORTHO05D000737 6.0e-23 111.3 146 46.6
Rhsim08G0251300 Rhododendron simsii HOM05D000518 ORTHO05D000737 6.0e-23 111.3 146 46.6
Ah.15g094270 Amaranthus hybridus HOM05D000518 ORTHO05D000737 7.9e-23 110.9 146 45.2
ClCG09G001720 Citrullus lanatus HOM05D000518 ORTHO05D000737 7.9e-23 110.9 136 47.1
MELO3C024272.2 Cucumis melo HOM05D000518 ORTHO05D000737 7.9e-23 110.9 136 47.8
CsaV3_7G033610 Cucumis sativus L. HOM05D000518 ORTHO05D000737 7.9e-23 110.9 136 47.1
vmacro18736 Vaccinium macrocarpon HOM05D000518 ORTHO05D000737 7.9e-23 110.9 146 45.9
Lalb_Chr01g0011621 Lupinus albus HOM05D000518 ORTHO05D000737 1.0e-22 110.5 146 46.6
Duzib192G0563 Durio zibethinus HOM05D000518 ORTHO05D000737 1.3e-22 110.2 146 45.9
THA.LOC104812334 Tarenaya hassleriana HOM05D000518 ORTHO05D000737 1.3e-22 110.2 146 45.9
Cpa.g.sc176.21 Carica papaya HOM05D000518 ORTHO05D000737 1.8e-22 109.8 146 46.6
Lj9C543G12 Lonicera japonica HOM05D000518 ORTHO05D000737 1.8e-22 109.8 146 45.9
Os02g0537900 Oryza sativa ssp. japonica HOM05D000518 ORTHO05D000737 1.8e-22 109.8 146 45.9
TAR383G0005 Trochodendron aralioides HOM05D000518 ORTHO05D000737 1.8e-22 109.8 146 45.2
Aa31LG4G2070 Aethionema arabicum HOM05D000518 ORTHO05D000737 2.3e-22 109.4 146 45.9
Lj3g0016361 Lotus japonicus HOM05D000518 ORTHO05D000737 2.3e-22 109.4 136 47.8
Medtr4g005280 Medicago truncatula HOM05D000518 ORTHO05D000737 2.3e-22 109.4 136 47.1
Dinv20326 Davidia involucrata HOM05D000518 ORTHO05D000737 3.0e-22 109.0 146 45.9
Oeu042879.1 Olea europaea HOM05D000518 ORTHO05D000737 3.0e-22 109.0 146 45.2
Potri.010G254200 Populus trichocarpa HOM05D000518 ORTHO05D000737 3.0e-22 109.0 146 45.2
Sabra10G0197700 Salix brachista HOM05D000518 ORTHO05D000737 3.0e-22 109.0 146 45.9
TWI12G1233 Tripterygium wilfordii HOM05D000518 ORTHO05D000737 3.0e-22 109.0 136 45.6
Aqoxy7G02688 Aquilegia oxysepala HOM05D000518 ORTHO05D000737 3.9e-22 108.6 146 45.2
Nitab4.5_0000099g0070 Nicotiana tabacum HOM05D000518 ORTHO05D000737 3.9e-22 108.6 146 45.2
Peaxi162Scf00079g01916 Petunia axillaris HOM05D000518 ORTHO05D000737 3.9e-22 108.6 146 45.2
unitig_899.g15340 Utricularia gibba HOM05D000518 ORTHO05D000737 3.9e-22 108.6 146 45.2
CAN.G264.26 Capsicum annuum HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
AUR62001323 Chenopodium quinoa HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 44.5
AUR62025706 Chenopodium quinoa HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 44.5
Dinv37775 Davidia involucrata HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Duzib235G0117 Durio zibethinus HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
MBI13_g31563_MAGBIO Magnolia biondii HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Manes.14G008800 Manihot esculenta HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Solyc04g071880.3 Solanum lycopersicum HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Sopen04g027850 Solanum pennellii HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Thecc.06G054600 Theobroma cacao HOM05D000518 ORTHO05D000737 5.1e-22 108.2 146 45.2
Actinidia21895 Actinidia chinensis HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 44.5
AT1G16780 Arabidopsis thaliana HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.9
Glyma.07G001500 Glycine max HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.2
Glyma.08G225500 Glycine max HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.2
Gohir.D10G001600 Gossypium hirsutum HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.9
Gorai.011G002000 Gossypium raimondii HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.9
Lsat_1_v5_gn_7_12700 Lactuca sativa HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.9
QL05p088440 Quercus lobata HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.2
PGSC0003DMG400025085 Solanum tuberosum HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.2
TPR.G38716 Trifolium pratense HOM05D000518 ORTHO05D000737 6.7e-22 107.8 136 46.3
VMungo0331G2033 Vigna mungo HOM05D000518 ORTHO05D000737 6.7e-22 107.8 146 45.2
Atru.chr1.2607 Acer truncatum HOM05D000518 ORTHO05D000737 8.7e-22 107.5 146 45.2
Cc04_g00150 Coffea canephora HOM05D000518 ORTHO05D000737 8.7e-22 107.5 146 45.2
Gohir.A06G116100 Gossypium hirsutum HOM05D000518 ORTHO05D000737 8.7e-22 107.5 146 45.2
Nn8g41075 Nelumbo nucifera HOM05D000518 ORTHO05D000737 8.7e-22 107.5 146 45.2
TWI18G0524 Tripterygium wilfordii HOM05D000518 ORTHO05D000737 8.7e-22 107.5 136 45.6
Migut.M01833 Erythranthe guttata HOM05D000518 ORTHO05D000737 1.1e-21 107.1 146 43.8
Oeu052328.1 Olea europaea HOM05D000518 ORTHO05D000737 1.1e-21 107.1 146 44.5
Oeu052329.1 Olea europaea HOM05D000518 ORTHO05D000737 1.1e-21 107.1 146 44.5
ATR0626G270 Amborella trichopoda HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 45.2
CANSAT01G0920 Cannabis sativa HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 45.9
DCAR_007674 Daucus carota HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 45.2
Gohir.A10G001500 Gossypium hirsutum HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 45.2
Gorai.010G141300 Gossypium raimondii HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 44.5
Manes.06G179000 Manihot esculenta HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 45.2
Nitab4.5_0005691g0030 Nicotiana tabacum HOM05D000518 ORTHO05D000737 1.5e-21 106.7 146 44.5
MSTRG.6874 Avicennia marina HOM05D000518 ORTHO05D000737 1.9e-21 106.3 146 43.8
CiPaw.02G128500 Carya illinoinensis HOM05D000518 ORTHO05D000737 1.9e-21 106.3 146 45.9
Gohir.D06G120900 Gossypium hirsutum HOM05D000518 ORTHO05D000737 1.9e-21 106.3 146 44.5
ECA247G0909 Erigeron canadensis HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 43.2
Thhalv10018137m.g Eutrema salsugineum HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 44.5
Lalb_Chr04g0264811 Lupinus albus HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 45.2
Phvul.010G164900 Phaseolus vulgaris HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 44.5
Prupe.3G024800 Prunus persica HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 45.2
SGA_v2.0_scaffold495G52458 Striga asiatica HOM05D000518 ORTHO05D000737 3.3e-21 105.5 146 43.2
CARHR017240 Cardamine hirsuta HOM05D000518 ORTHO05D000737 4.3e-21 105.1 146 43.8
CiPaw.01G207500 Carya illinoinensis HOM05D000518 ORTHO05D000737 4.3e-21 105.1 146 45.2
Haze_16202 Corylus avellana HOM05D000518 ORTHO05D000737 4.3e-21 105.1 146 44.5
FvH4_6g36660 Fragaria vesca HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 44.5
FAN02G0571 Fragaria x ananassa HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 44.5
FAN09G0077 Fragaria x ananassa HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 44.5
FAN14G3566 Fragaria x ananassa HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 44.5
RcHm_v2.0_Chr2g0149161 Rosa chinensis HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 44.5
Hund05667 Selenicereus undatus HOM05D000518 ORTHO05D000737 5.6e-21 104.8 146 42.5
AL2G39350 Arabidopsis lyrata HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
AT1G78920 Arabidopsis thaliana HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
EL10Ac7g18127 Beta vulgaris HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BcaB03g16054 Brassica carinata HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BcaB05g25164 Brassica carinata HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BcaC08g47441 Brassica carinata HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
A02p22420 Brassica napus HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
A07p44090 Brassica napus HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
C02p36080 Brassica napus HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
C06p52820 Brassica napus HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BolC2t09623H Brassica oleracea HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BolC6t40299H Brassica oleracea HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BraA02t07246Z Brassica rapa HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
BraA07t31917Z Brassica rapa HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
Carub.0002s2576 Capsella rubella HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
CARHR072520 Cardamine hirsuta HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
Sp5g33950 Schrenkiella parvula HOM05D000518 ORTHO05D000737 7.4e-21 104.4 146 44.5
AL1G28950 Arabidopsis lyrata HOM05D000518 ORTHO05D000737 9.6e-21 104.0 146 45.2
FAN05G0574 Fragaria x ananassa HOM05D000518 ORTHO05D000737 9.6e-21 104.0 146 44.5
Cfa003430 Carpinus fangiana HOM05D000518 ORTHO05D000737 1.3e-20 103.6 146 43.8
Ca_20978_v3 Cicer arietinum L. HOM05D000518 ORTHO05D000737 1.3e-20 103.6 136 45.6
CDE02G0119 Ceratophyllum demersum HOM05D000518 ORTHO05D000737 1.6e-20 103.2 139 47.5
PSO063G4458 Papaver somniferum HOM05D000518 ORTHO05D000737 1.6e-20 103.2 146 44.5
PSO170G4965 Papaver somniferum HOM05D000518 ORTHO05D000737 1.6e-20 103.2 146 44.5
MD09G1167000 Malus domestica HOM05D000518 ORTHO05D000737 2.1e-20 102.8 146 45.2
MD17G1161300 Malus domestica HOM05D000518 ORTHO05D000737 2.1e-20 102.8 146 45.2
SMO271G0014 Selaginella moellendorffii HOM05D000518 ORTHO05D000737 3.7e-20 102.1 146 43.2
HPP92_025957 Vanilla planifolia HOM05D000518 ORTHO05D000737 3.7e-20 102.1 146 43.2
Sed0023679 Sechium edule HOM05D000518 ORTHO05D000737 8.1e-20 100.9 136 44.1
SEGI_16095 Sequoiadendron giganteum HOM05D000518 ORTHO05D000737 8.1e-20 100.9 146 43.8
SEGI_21310 Sequoiadendron giganteum HOM05D000518 ORTHO05D000737 8.1e-20 100.9 146 43.8
Mapoly0177s0007 Marchantia polymorpha HOM05D000518 ORTHO05D000737 1.1e-19 100.5 146 41.8
CDE04G1853 Ceratophyllum demersum HOM05D000518 ORTHO05D000737 1.4e-19 100.1 139 45.3
Pp3c1_35630 Physcomitrium patens HOM05D000518 ORTHO05D000737 4.0e-19 98.6 146 42.5
Pp3c17_11450 Physcomitrium patens HOM05D000518 ORTHO05D000737 1.5e-18 96.7 146 41.8
Potri.008G003502 Populus trichocarpa HOM05D000518 ORTHO05D000737 2.2e-17 92.8 139 43.9
Lsat_1_v5_gn_8_121001 Lactuca sativa HOM05D000518 ORTHO05D000737 2.9e-17 92.4 138 41.3
CBR_g3376 Chara braunii HOM05D000518 ORTHO05D000737 4.2e-16 88.6 136 36.8
AagrBONN_evm.TU.Sc2ySwM_228.3551 Anthoceros agrestis HOM05D000518 ORTHO05D000737 3.5e-15 85.5 139 38.8
PRCOL_00007020 Prasinoderma coloniale HOM05D000518 ORTHO05D000737 5.1e-14 81.6 146 39.0
Psat7g265000 Pisum sativum HOM05D000518 ORTHO05D000737 8.2e-12 74.3 81 53.1
MCO15G560 Micromonas commoda HOM05D000518 ORTHO05D000737 1.4e-11 73.6 96 43.8
SHI24163 Sapria himalayana HOM05D000518 ORTHO05D000737 1.8e-11 73.2 120 44.2
SHI24235 Sapria himalayana HOM05D000518 ORTHO05D000737 3.1e-11 72.4 96 51.0
Oeu019102.1 Olea europaea HOM05D000518 ORTHO05D000737 2.1e-07 59.7 59 50.8


User provided reference genes

Program Settings