Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.4e-99 366.3 184 100.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.4e-43 180.3 180 61.1
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 3.4e-42 175.6 180 60.6
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 8.4e-41 171.0 143 67.8
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.9e-40 169.9 190 56.8
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.5e-40 169.5 165 61.8
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.2e-40 169.1 177 58.2
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.0e-38 164.1 220 50.0
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.0e-38 164.1 220 50.0
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 5.1e-38 161.8 192 53.6
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.7e-37 158.3 143 62.2
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 5.8e-34 148.3 176 55.1
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 3.5e-31 139.0 161 53.4
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 3.5e-31 139.0 161 53.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.5e-29 133.7 119 63.9
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.4e-29 131.3 142 56.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.8e-27 126.7 161 49.7
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 3.1e-27 125.9 163 49.1
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 5.3e-27 125.2 163 49.1
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 5.3e-27 125.2 163 49.1
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 5.3e-27 125.2 163 49.1
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 5.3e-27 125.2 163 49.1
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 6.9e-27 124.8 162 48.1
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.9e-27 124.8 163 49.1
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 6.9e-27 124.8 163 49.1
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 9.0e-27 124.4 102 64.7
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.2e-26 124.0 110 62.7
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 1.2e-26 124.0 110 62.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.2e-26 124.0 154 53.9
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.2e-26 124.0 97 69.1
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.5e-26 123.6 110 62.7
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.5e-26 123.6 107 64.5
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.0e-26 123.2 110 61.8
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.6e-26 122.9 131 55.0
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.6e-26 122.9 131 55.0
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 2.6e-26 122.9 111 62.2
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 2.6e-26 122.9 111 62.2
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 3.4e-26 122.5 162 48.8
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 5.9e-26 121.7 132 54.5
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 7.7e-26 121.3 82 74.4
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.0e-25 120.9 110 60.9
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 1.0e-25 120.9 107 61.7
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 1.3e-25 120.6 128 53.9
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.7e-25 120.2 107 61.7
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.7e-25 120.2 76 80.3
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.7e-25 120.2 76 80.3
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.2e-25 119.8 107 62.6
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.2e-25 119.8 107 62.6
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 5.0e-25 118.6 132 53.0
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 5.0e-25 118.6 75 80.0
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 8.5e-25 117.9 120 55.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-24 117.5 76 76.3
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.1e-24 117.5 163 47.2
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.4e-24 117.1 163 47.2
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.4e-24 117.1 163 47.2
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.9e-24 116.7 117 56.4
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 1.9e-24 116.7 120 55.0
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 7.2e-24 114.8 72 80.6
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 7.2e-24 114.8 163 46.6
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 7.2e-24 114.8 162 46.9
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.6e-23 113.6 107 58.9
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-23 113.6 107 58.9
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-23 113.6 107 58.9
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 3.6e-23 112.5 107 57.9
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 4.6e-23 112.1 107 60.7
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 6.1e-23 111.7 128 52.3
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 5.1e-22 108.6 101 59.4
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 6.7e-22 108.2 67 80.6
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.1e-21 107.5 76 75.0
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.1e-21 107.5 76 75.0
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-21 106.7 86 72.1
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 3.3e-21 105.9 62 83.9
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.7e-21 105.1 180 40.6
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 9.7e-21 104.4 99 60.6
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 9.7e-21 104.4 99 60.6
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.9e-19 98.2 89 60.7
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.2e-18 97.4 85 64.7
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 4.5e-18 95.5 66 77.3
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 5.9e-18 95.1 168 44.6
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 8.5e-17 91.3 70 71.4
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.9e-16 90.1 66 74.2
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.2e-15 87.4 58 74.1
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 2.1e-15 86.7 87 59.8
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.5e-13 80.5 51 78.4
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 7.4e-13 78.2 48 79.2
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 2.8e-12 76.3 75 62.7
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 2.8e-12 76.3 75 62.7
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.8e-12 76.3 75 62.7
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.8e-12 76.3 75 62.7
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 4.8e-12 75.5 75 65.3
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 1.1e-11 74.3 105 47.6
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 1.4e-11 73.9 50 80.0
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 2.4e-11 73.2 74 62.2
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.1e-11 72.8 50 80.0
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.1e-11 72.8 50 80.0
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.1e-11 72.8 50 80.0
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 3.1e-11 72.8 50 80.0
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 4.1e-11 72.4 50 78.0
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 7.0e-11 71.6 50 78.0
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 9.1e-11 71.2 109 47.7
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 9.1e-11 71.2 109 47.7
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 9.1e-11 71.2 109 47.7
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 9.1e-11 71.2 109 47.7
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 1.2e-10 70.9 50 78.0
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 1.2e-10 70.9 50 78.0
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 1.2e-10 70.9 50 78.0
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 1.2e-10 70.9 50 78.0
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 2.0e-10 70.1 50 76.0
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 2.0e-10 70.1 50 76.0
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.0e-10 70.1 40 92.5
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 2.6e-10 69.7 54 74.1
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 2.6e-10 69.7 39 94.9
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 4.5e-10 68.9 50 74.0
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 1.0e-09 67.8 43 83.7
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 2.9e-09 66.2 50 70.0
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 8.5e-09 64.7 50 72.0
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 8.5e-09 64.7 50 72.0
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 4.2e-08 62.4 38 81.6
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 9.4e-08 61.2 39 74.4
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 1.2e-07 60.8 50 70.0
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 1.2e-07 60.8 50 70.0
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 1.2e-07 60.8 50 70.0
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-07 59.3 40 80.0
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 4.7e-07 58.9 37 83.8
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.7e-06 55.1 32 81.2
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 8.8e-06 54.7 36 77.8


User provided reference genes

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