Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23906 Sapria himalayana HOM05D000842 ORTHO05D000650 4.4e-37 157.5 84 100.0
SHI29323 Sapria himalayana HOM05D000842 ORTHO05D000650 2.2e-20 102.1 74 74.3
SHI39231 Sapria himalayana HOM05D000842 ORTHO05D000650 2.2e-20 102.1 74 74.3
SHI27567 Sapria himalayana HOM05D000842 ORTHO05D000650 1.2e-18 96.3 53 94.3
SHI29326 Sapria himalayana HOM05D000842 ORTHO05D000650 3.0e-17 91.7 65 75.4
SHI30500 Sapria himalayana HOM05D000842 ORTHO05D000650 2.5e-16 88.6 60 78.3
ClCG11G017130 Citrullus lanatus HOM05D000842 ORTHO05D000650 4.0e-14 81.3 59 74.6
MELO3C025674.2 Cucumis melo HOM05D000842 ORTHO05D000650 4.0e-14 81.3 59 74.6
CsaV3_4G032790 Cucumis sativus L. HOM05D000842 ORTHO05D000650 4.0e-14 81.3 59 74.6
Sc03g0010740 Simmondsia chinensis HOM05D000842 ORTHO05D000650 1.5e-13 79.3 59 74.6
Glyma.08G149000 Glycine max HOM05D000842 ORTHO05D000650 3.4e-13 78.2 59 74.6
Phvul.005G039800 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 3.4e-13 78.2 59 74.6
SHI29329 Sapria himalayana HOM05D000842 ORTHO05D000650 3.4e-13 78.2 60 70.0
VMungo1080G0610 Vigna mungo HOM05D000842 ORTHO05D000650 3.4e-13 78.2 59 74.6
CSS0037827 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 4.4e-13 77.8 59 71.2
Gohir.A01G047000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 4.4e-13 77.8 53 77.4
Gohir.D01G037700 Gossypium hirsutum HOM05D000842 ORTHO05D000650 4.4e-13 77.8 53 77.4
Gorai.002G046000 Gossypium raimondii HOM05D000842 ORTHO05D000650 4.4e-13 77.8 53 77.4
Sed0020191 Sechium edule HOM05D000842 ORTHO05D000650 4.4e-13 77.8 50 82.0
Thecc.07G134900 Theobroma cacao HOM05D000842 ORTHO05D000650 5.8e-13 77.4 59 74.6
TPR.G11742 Trifolium pratense HOM05D000842 ORTHO05D000650 5.8e-13 77.4 59 71.2
Cfa019507 Carpinus fangiana HOM05D000842 ORTHO05D000650 7.6e-13 77.0 59 71.2
Haze_08444 Corylus avellana HOM05D000842 ORTHO05D000650 7.6e-13 77.0 59 71.2
Lj3g0009813 Lotus japonicus HOM05D000842 ORTHO05D000650 7.6e-13 77.0 59 69.5
Glyma.15G269300 Glycine max HOM05D000842 ORTHO05D000650 9.9e-13 76.6 59 72.9
QL08p024827 Quercus lobata HOM05D000842 ORTHO05D000650 9.9e-13 76.6 59 71.2
Sabra16G0252400 Salix brachista HOM05D000842 ORTHO05D000650 9.9e-13 76.6 59 72.9
Actinidia12607 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.3e-12 76.3 59 71.2
Ciclev10021239m.g Citrus clementina HOM05D000842 ORTHO05D000650 1.3e-12 76.3 74 62.2
Medtr2g060900 Medicago truncatula HOM05D000842 ORTHO05D000650 1.3e-12 76.3 59 71.2
GSVIVG01021318001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.7e-12 75.9 59 69.5
COL.COLO4_03606 Corchorus olitorius HOM05D000842 ORTHO05D000650 2.2e-12 75.5 53 75.5
Ca_02945_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 2.9e-12 75.1 63 66.7
Potri.001G382700 Populus trichocarpa HOM05D000842 ORTHO05D000650 2.9e-12 75.1 53 77.4
Psat1g128080 Pisum sativum HOM05D000842 ORTHO05D000650 3.8e-12 74.7 59 69.5
Gohir.A04G045400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 4.9e-12 74.3 53 75.5
Gorai.009G361700 Gossypium raimondii HOM05D000842 ORTHO05D000650 4.9e-12 74.3 53 75.5
ATR0680G176 Amborella trichopoda HOM05D000842 ORTHO05D000650 6.4e-12 73.9 51 76.5
Gohir.D05G337400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 6.4e-12 73.9 53 73.6
FvH4_3g17610 Fragaria vesca HOM05D000842 ORTHO05D000650 8.4e-12 73.6 57 70.2
FAN11G0959 Fragaria x ananassa HOM05D000842 ORTHO05D000650 8.4e-12 73.6 57 70.2
FAN16G3507 Fragaria x ananassa HOM05D000842 ORTHO05D000650 8.4e-12 73.6 57 70.2
FAN21G0331 Fragaria x ananassa HOM05D000842 ORTHO05D000650 8.4e-12 73.6 57 70.2
BcaB06g25359 Brassica carinata HOM05D000842 ORTHO05D000650 1.1e-11 73.2 52 76.9
BcaC05g29039 Brassica carinata HOM05D000842 ORTHO05D000650 1.1e-11 73.2 52 76.9
A05p34700 Brassica napus HOM05D000842 ORTHO05D000650 1.1e-11 73.2 52 76.9
C05p52500 Brassica napus HOM05D000842 ORTHO05D000650 1.1e-11 73.2 52 76.9
BolC5t33933H Brassica oleracea HOM05D000842 ORTHO05D000650 1.1e-11 73.2 52 76.9
Thhalv10021120m.g Eutrema salsugineum HOM05D000842 ORTHO05D000650 1.1e-11 73.2 57 71.9
RcHm_v2.0_Chr5g0029311 Rosa chinensis HOM05D000842 ORTHO05D000650 1.1e-11 73.2 56 71.4
CARHR089690 Cardamine hirsuta HOM05D000842 ORTHO05D000650 1.4e-11 72.8 57 70.2
vmacro09419 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 1.4e-11 72.8 54 72.2
Hma1.2p1_0713F.1_g207890 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 1.9e-11 72.4 52 76.9
Manes.03G078500 Manihot esculenta HOM05D000842 ORTHO05D000650 1.9e-11 72.4 52 75.0
THA.LOC104822582 Tarenaya hassleriana HOM05D000842 ORTHO05D000650 1.9e-11 72.4 55 72.7
Ah.04g161920 Amaranthus hybridus HOM05D000842 ORTHO05D000650 2.4e-11 72.0 59 64.4
AL3G27060 Arabidopsis lyrata HOM05D000842 ORTHO05D000650 2.4e-11 72.0 57 70.2
EL10Ac4g08436 Beta vulgaris HOM05D000842 ORTHO05D000650 2.4e-11 72.0 59 62.7
Carub.0003s1442 Capsella rubella HOM05D000842 ORTHO05D000650 2.4e-11 72.0 52 75.0
Cc05_g10630 Coffea canephora HOM05D000842 ORTHO05D000650 2.4e-11 72.0 56 71.4
Dinv13354 Davidia involucrata HOM05D000842 ORTHO05D000650 2.4e-11 72.0 55 70.9
Dinv26701 Davidia involucrata HOM05D000842 ORTHO05D000650 2.4e-11 72.0 52 75.0
Sp3g12980 Schrenkiella parvula HOM05D000842 ORTHO05D000650 2.4e-11 72.0 52 76.9
CiPaw.11G155400 Carya illinoinensis HOM05D000842 ORTHO05D000650 3.2e-11 71.6 52 75.0
FAN25G0524 Fragaria x ananassa HOM05D000842 ORTHO05D000650 4.1e-11 71.2 56 69.6
Prupe.4G155500 Prunus persica HOM05D000842 ORTHO05D000650 4.1e-11 71.2 55 70.9
TAR627G1038 Trochodendron aralioides HOM05D000842 ORTHO05D000650 4.1e-11 71.2 55 70.9
TAR629G1485 Trochodendron aralioides HOM05D000842 ORTHO05D000650 4.1e-11 71.2 56 69.6
AT3G14750 Arabidopsis thaliana HOM05D000842 ORTHO05D000650 5.4e-11 70.9 50 76.0
BraA05t22286Z Brassica rapa HOM05D000842 ORTHO05D000650 5.4e-11 70.9 52 75.0
Lalb_Chr01g0015161 Lupinus albus HOM05D000842 ORTHO05D000650 7.1e-11 70.5 59 64.4
Solyc07g062110.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 9.2e-11 70.1 48 79.2
Sopen07g030370 Solanum pennellii HOM05D000842 ORTHO05D000650 9.2e-11 70.1 48 79.2
Aa31LG8G1970 Aethionema arabicum HOM05D000842 ORTHO05D000650 1.2e-10 69.7 52 75.0
CSS0006711 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 1.2e-10 69.7 55 69.1
MD03G1250800 Malus domestica HOM05D000842 ORTHO05D000650 1.2e-10 69.7 55 69.1
PGR031G0859 Punica granatum HOM05D000842 ORTHO05D000650 1.6e-10 69.3 58 65.5
MD11G1271000 Malus domestica HOM05D000842 ORTHO05D000650 2.7e-10 68.6 52 71.2
CiPaw.12G110100 Carya illinoinensis HOM05D000842 ORTHO05D000650 3.5e-10 68.2 50 74.0
AUR62013943 Chenopodium quinoa HOM05D000842 ORTHO05D000650 3.5e-10 68.2 59 61.0
AUR62019667 Chenopodium quinoa HOM05D000842 ORTHO05D000650 3.5e-10 68.2 59 61.0
DCAR_019619 Daucus carota HOM05D000842 ORTHO05D000650 3.5e-10 68.2 52 71.2
arahy.Tifrunner.gnm1.ann1.68BB74 Arachis hypogaea HOM05D000842 ORTHO05D000650 4.6e-10 67.8 49 73.5
arahy.Tifrunner.gnm1.ann1.B9TNKV Arachis hypogaea HOM05D000842 ORTHO05D000650 4.6e-10 67.8 49 73.5
Nn6g34387 Nelumbo nucifera HOM05D000842 ORTHO05D000650 4.6e-10 67.8 52 69.2
TWI39G0754 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 7.8e-10 67.0 51 70.6
Eucgr.F03229 Eucalyptus grandis HOM05D000842 ORTHO05D000650 1.0e-09 66.6 55 67.3
TAR633G2814 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.0e-09 66.6 53 62.3
Actinidia34476 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.3e-09 66.2 53 62.3
Nitab4.5_0001140g0080 Nicotiana tabacum HOM05D000842 ORTHO05D000650 1.3e-09 66.2 46 78.3
Nitab4.5_0003618g0010 Nicotiana tabacum HOM05D000842 ORTHO05D000650 1.3e-09 66.2 46 78.3
Peaxi162Scf00111g10127 Petunia axillaris HOM05D000842 ORTHO05D000650 1.3e-09 66.2 46 78.3
TWI38G0621 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 1.3e-09 66.2 50 72.0
CAN.G375.55 Capsicum annuum HOM05D000842 ORTHO05D000650 1.7e-09 65.9 52 71.2
ECA236G2583 Erigeron canadensis HOM05D000842 ORTHO05D000650 2.3e-09 65.5 52 69.2
MBI03_g33624_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 2.3e-09 65.5 59 57.6
RhsimUnG0206200 Rhododendron simsii HOM05D000842 ORTHO05D000650 2.3e-09 65.5 49 73.5
TWI38G0350 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 2.3e-09 65.5 52 69.2
Actinidia00874 Actinidia chinensis HOM05D000842 ORTHO05D000650 3.0e-09 65.1 58 60.3
Nn2g10984 Nelumbo nucifera HOM05D000842 ORTHO05D000650 5.1e-09 64.3 53 62.3
Lj1A822T52 Lonicera japonica HOM05D000842 ORTHO05D000650 6.6e-09 63.9 42 81.0
CDE04G0048 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.1e-08 63.2 61 60.7
Lj1A127G60 Lonicera japonica HOM05D000842 ORTHO05D000650 1.1e-08 63.2 59 55.9
HanXRQChr15g0495361 Helianthus annuus HOM05D000842 ORTHO05D000650 1.5e-08 62.8 52 67.3
HPP92_012416 Vanilla planifolia HOM05D000842 ORTHO05D000650 1.5e-08 62.8 46 71.7
Atru.chr2.1899 Acer truncatum HOM05D000842 ORTHO05D000650 1.9e-08 62.4 59 61.0
Manes.02G216400 Manihot esculenta HOM05D000842 ORTHO05D000650 3.3e-08 61.6 63 52.4
SHI30994 Sapria himalayana HOM05D000842 ORTHO05D000650 3.3e-08 61.6 42 81.0
Sed0016655 Sechium edule HOM05D000842 ORTHO05D000650 5.6e-08 60.8 49 63.3
CSS0029835 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.6e-08 60.1 53 56.6
vmacro14616 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 9.6e-08 60.1 54 59.3
Nn3g20957 Nelumbo nucifera HOM05D000842 ORTHO05D000650 1.2e-07 59.7 45 66.7
PSO541G2069 Papaver somniferum HOM05D000842 ORTHO05D000650 1.2e-07 59.7 66 51.5
MSTRG.21235 Avicennia marina HOM05D000842 ORTHO05D000650 1.6e-07 59.3 58 50.0
CDE01G0231 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.6e-07 59.3 57 57.9
ClCG11G005220 Citrullus lanatus HOM05D000842 ORTHO05D000650 1.6e-07 59.3 49 61.2
MELO3C022073.2 Cucumis melo HOM05D000842 ORTHO05D000650 1.6e-07 59.3 49 61.2
CsaV3_5G038960 Cucumis sativus L. HOM05D000842 ORTHO05D000650 1.6e-07 59.3 49 61.2
Actinidia03621 Actinidia chinensis HOM05D000943 ORTHO05D008314 2.1e-07 58.9 46 67.4
Aqoxy4G00170 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 2.1e-07 58.9 56 55.4
Dinv28686 Davidia involucrata HOM05D000842 ORTHO05D000650 2.1e-07 58.9 53 54.7
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 2.1e-07 58.9 45 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3775 Anthoceros agrestis HOM05D000842 ORTHO05D000650 3.6e-07 58.2 53 58.5
Phvul.008G021400 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 3.6e-07 58.2 49 59.2
CDE12G0673 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 4.7e-07 57.8 50 62.0
Ca_06725_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 4.7e-07 57.8 49 59.2
Lj1g0019367 Lotus japonicus HOM05D000842 ORTHO05D000650 4.7e-07 57.8 49 59.2
Oeu007108.1 Olea europaea HOM05D000842 ORTHO05D000650 4.7e-07 57.8 49 57.1
Actinidia23867 Actinidia chinensis HOM05D000842 ORTHO05D000650 6.2e-07 57.4 53 54.7
Aqoxy3G00420 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 6.2e-07 57.4 49 57.1
Ciclev10026255m.g Citrus clementina HOM05D000842 ORTHO05D000650 6.2e-07 57.4 51 62.7
SEGI_02504 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 6.2e-07 57.4 53 60.4
TWI34G1721 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 6.2e-07 57.4 48 58.3
Zm00001eb322370 Zea mays HOM05D000842 ORTHO05D000650 8.1e-07 57.0 53 54.7
Atru.chr8.779 Acer truncatum HOM05D000842 ORTHO05D000650 1.1e-06 56.6 49 57.1
CDE08G1357 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.1e-06 56.6 53 58.5
ClCG03G000280 Citrullus lanatus HOM05D000842 ORTHO05D000650 1.1e-06 56.6 59 50.8
RcHm_v2.0_Chr2g0163821 Rosa chinensis HOM05D000842 ORTHO05D000650 1.1e-06 56.6 78 44.9
CSS0048360 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 1.4e-06 56.2 53 52.8
CiPaw.01G225800 Carya illinoinensis HOM05D000842 ORTHO05D000650 1.4e-06 56.2 51 60.8
CsaV3_1G036640 Cucumis sativus L. HOM05D000842 ORTHO05D000650 1.4e-06 56.2 59 50.8
Duzib168G0310 Durio zibethinus HOM05D000842 ORTHO05D000650 1.4e-06 56.2 75 42.7
Glyma.18G279600 Glycine max HOM05D000842 ORTHO05D000650 1.4e-06 56.2 49 57.1
GSVIVG01024666001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.4e-06 56.2 53 54.7
MSTRG.14253 Avicennia marina HOM05D000842 ORTHO05D000650 1.8e-06 55.8 45 62.2
Manes.11G027300 Manihot esculenta HOM05D000842 ORTHO05D000650 1.8e-06 55.8 53 58.5
ATR0307G011 Amborella trichopoda HOM05D000842 ORTHO05D000650 2.4e-06 55.5 53 56.6
SEGI_10988 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 2.4e-06 55.5 54 53.7
HPP92_026124 Vanilla planifolia HOM05D000842 ORTHO05D000650 2.4e-06 55.5 53 52.8
VMungo1383G2138 Vigna mungo HOM05D000842 ORTHO05D000650 2.4e-06 55.5 49 55.1
Cpa.g.sc25.65 Carica papaya HOM05D000842 ORTHO05D000650 3.1e-06 55.1 53 60.4
CDE06G1580 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 3.1e-06 55.1 55 56.4
Duzib138G0760 Durio zibethinus HOM05D000842 ORTHO05D000650 3.1e-06 55.1 64 51.6
Migut.H02029 Erythranthe guttata HOM05D000842 ORTHO05D000650 3.1e-06 55.1 44 63.6
Lsat_1_v5_gn_1_36001 Lactuca sativa HOM05D000842 ORTHO05D000650 3.1e-06 55.1 50 62.0
Nn3g17833 Nelumbo nucifera HOM05D000842 ORTHO05D000650 3.1e-06 55.1 53 58.5
Nn3g17835 Nelumbo nucifera HOM05D000842 ORTHO05D000650 3.1e-06 55.1 53 58.5
Atru.chr1.3678 Acer truncatum HOM05D000842 ORTHO05D000650 4.0e-06 54.7 54 55.6
Aa31LG10G960 Aethionema arabicum HOM05D000842 ORTHO05D000650 4.0e-06 54.7 81 45.7
A06p00370 Brassica napus HOM05D000842 ORTHO05D000650 4.0e-06 54.7 53 56.6
BraA06t23252Z Brassica rapa HOM05D000842 ORTHO05D000650 4.0e-06 54.7 53 56.6
CBR_g3067 Chara braunii HOM05D000842 ORTHO05D000650 4.0e-06 54.7 56 53.6
Ciclev10012337m.g Citrus clementina HOM05D000842 ORTHO05D000650 4.0e-06 54.7 78 43.6
Cc01_g14720 Coffea canephora HOM05D000842 ORTHO05D000650 4.0e-06 54.7 51 54.9
Lsat_1_v5_gn_7_100260 Lactuca sativa HOM05D000842 ORTHO05D000650 4.0e-06 54.7 45 66.7
Oeu033428.1 Olea europaea HOM05D000842 ORTHO05D000650 4.0e-06 54.7 49 55.1
Ciclev10008984m.g Citrus clementina HOM05D000842 ORTHO05D000650 5.2e-06 54.3 53 56.6
ECA234G1704 Erigeron canadensis HOM05D000842 ORTHO05D000650 5.2e-06 54.3 50 62.0
Lsat_1_v5_gn_9_18420 Lactuca sativa HOM05D000842 ORTHO05D000650 5.2e-06 54.3 84 42.9
QL05p014694 Quercus lobata HOM05D000842 ORTHO05D000650 5.2e-06 54.3 53 54.7
Thecc.04G145000 Theobroma cacao HOM05D000842 ORTHO05D000650 5.2e-06 54.3 78 43.6
CSS0002294 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 6.9e-06 53.9 52 50.0
CSS0025525 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 6.9e-06 53.9 52 50.0
FAN09G2772 Fragaria x ananassa HOM05D000842 ORTHO05D000650 6.9e-06 53.9 49 57.1
Os07g0508200 Oryza sativa ssp. japonica HOM05D000842 ORTHO05D000650 6.9e-06 53.9 61 49.2
PGR102G2742 Punica granatum HOM05D000842 ORTHO05D000650 6.9e-06 53.9 76 43.4
Thecc.06G109500 Theobroma cacao HOM05D000842 ORTHO05D000650 6.9e-06 53.9 53 56.6
GSVIVG01014086001 Vitis vinifera HOM05D000842 ORTHO05D000650 6.9e-06 53.9 52 55.8
BcaC08g43611 Brassica carinata HOM05D000842 ORTHO05D000650 9.0e-06 53.5 53 54.7
C06p10130 Brassica napus HOM05D000842 ORTHO05D000650 9.0e-06 53.5 53 54.7
Psat6g139640 Pisum sativum HOM05D000842 ORTHO05D000650 9.0e-06 53.5 53 49.1
TWI31G0085 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 9.0e-06 53.5 57 54.4


User provided reference genes

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