Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 0.0e+00 2069.7 1012 100.0
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.9e-272 943.0 691 67.7
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 6.3e-271 937.9 609 73.6
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.4e-270 936.8 688 68.3
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.2e-269 933.7 697 67.6
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 3.8e-268 928.7 662 68.6
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 3.8e-268 928.7 693 67.8
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 3.8e-268 928.7 713 65.6
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 5.5e-267 924.9 694 67.0
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 2.1e-266 922.9 647 69.1
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 2.7e-266 922.5 594 73.4
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.4e-265 920.2 653 68.0
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.0e-265 919.1 663 68.2
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.9e-264 916.4 687 65.6
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 2.5e-264 916.0 687 67.0
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 2.8e-263 912.5 638 68.5
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 8.2e-263 911.0 666 65.0
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 6.9e-262 907.9 765 61.7
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 5.9e-261 904.8 638 69.9
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 2.9e-260 902.5 655 67.5
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 3.8e-260 902.1 651 67.4
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 3.6e-258 895.6 697 63.3
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 3.9e-257 892.1 650 67.5
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 8.8e-257 891.0 641 68.2
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 3.3e-256 889.0 681 66.2
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 7.4e-256 887.9 659 68.0
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 4.8e-255 885.2 675 64.7
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 8.2e-255 884.4 699 64.8
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.8e-254 883.2 595 69.7
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.8e-254 883.2 606 69.5
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 3.1e-254 882.5 654 65.1
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 5.0e-252 875.2 627 66.8
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 6.5e-252 874.8 656 64.9
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 4.2e-251 872.1 720 61.4
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 7.2e-251 871.3 659 66.6
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 2.7e-250 869.4 600 68.5
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.0e-249 867.5 629 66.6
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 3.9e-249 865.5 698 61.5
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.9e-249 865.5 690 62.9
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 4.4e-248 862.1 593 67.8
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.8e-246 856.7 580 71.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 7.0e-246 854.7 603 67.3
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 2.6e-245 852.8 534 76.2
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 2.6e-245 852.8 708 62.6
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.3e-244 850.5 619 66.1
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 1.3e-244 850.5 713 59.6
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.1e-243 847.4 621 65.2
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.5e-243 847.0 723 59.1
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 8.0e-242 841.3 660 63.2
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 2.3e-241 839.7 620 67.4
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.0e-240 836.6 738 59.8
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 7.5e-240 834.7 618 66.3
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 2.8e-239 832.8 727 58.6
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 3.7e-239 832.4 595 66.7
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.4e-238 830.5 570 71.6
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.4e-238 830.5 527 74.4
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 9.1e-238 827.8 597 66.2
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 1.3e-236 823.9 634 63.4
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 3.8e-236 822.4 610 65.7
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 3.8e-236 822.4 662 61.6
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 1.5e-235 820.5 596 65.1
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 8.0e-234 814.7 710 59.2
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.4e-233 813.9 531 73.1
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-232 810.4 602 66.8
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.3e-231 807.4 531 72.7
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.4e-230 803.9 569 67.7
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 1.8e-230 803.5 607 64.1
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.2e-229 800.8 622 64.6
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.9e-227 793.5 678 60.3
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.2e-226 790.8 806 52.6
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 2.0e-224 783.5 698 59.5
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 1.7e-223 780.4 484 76.0
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 4.9e-223 778.9 624 61.1
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.4e-217 760.8 495 73.1
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 5.2e-217 758.8 748 55.1
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-216 757.7 688 59.3
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.9e-212 742.7 545 67.5
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 4.4e-208 729.2 556 63.8
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.6e-203 712.2 513 66.9
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 5.6e-203 712.2 723 53.9
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.5e-200 704.1 705 53.9
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.0e-200 703.7 527 65.7
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 7.8e-197 691.8 612 58.3
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 4.3e-195 686.0 530 64.0
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 9.5e-195 684.9 527 66.2
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 2.8e-194 683.3 591 56.9
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 3.2e-190 669.8 430 73.5
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 9.6e-187 658.3 671 51.9
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 2.6e-184 650.2 508 64.0
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.6e-181 641.0 700 51.3
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.8e-170 603.6 468 64.1
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.9e-169 599.0 437 66.1
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 8.2e-162 575.5 705 48.2
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 5.8e-160 569.3 650 50.8
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.0e-159 568.5 395 69.1
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 5.0e-151 539.7 351 73.5
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.7e-143 514.6 666 46.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 1.3e-135 488.4 376 62.2
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.1e-131 475.3 651 43.3
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.8e-116 424.9 276 73.2
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.1e-97 362.5 342 56.4
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 3.7e-90 337.4 209 73.2
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 3.7e-82 310.8 306 54.9
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.5e-78 298.1 272 59.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.6e-61 242.3 211 59.2
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-60 239.2 679 30.3
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 3.2e-57 228.0 243 49.4
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.3e-47 195.3 251 46.2
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.3e-46 191.4 196 55.1
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 2.1e-45 188.7 264 44.3
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 9.0e-44 183.3 91 86.8
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-43 183.0 136 69.9
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 1.9e-38 165.6 115 68.7
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.7e-38 164.1 192 51.0
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.3e-36 157.5 138 63.0
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 3.4e-35 154.8 506 24.3
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 4.5e-35 154.5 570 25.1
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 7.7e-35 153.7 126 55.6
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 2.2e-34 152.1 101 76.2
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 6.5e-34 150.6 647 24.0
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 5.7e-30 137.5 372 27.7
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 7.4e-30 137.1 179 42.5
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.0e-27 129.0 77 83.1
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 5.5e-25 120.9 223 38.6
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 7.2e-25 120.6 197 38.6
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.9e-24 117.1 523 23.3
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 2.3e-23 115.5 197 37.6
AagrBONN_evm.TU.Sc2ySwM_368.2662 Anthoceros agrestis HOM05D005348 ORTHO05D006635 6.3e-21 107.5 469 22.4
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.6e-19 102.1 153 37.9
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.5e-18 97.4 59 72.9
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.0e-15 90.1 132 38.6
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.4e-15 89.7 151 37.7
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 2.4e-12 79.0 145 36.6
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.0e-07 63.5 63 50.8


User provided reference genes

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