Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23479 Sapria himalayana HOM05D002352 ORTHO05D014906 2.2e-35 151.8 78 100.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 9.8e-23 109.8 77 67.5
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 9.8e-23 109.8 77 70.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.3e-22 109.4 77 71.4
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.3e-22 109.4 77 71.4
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 2.2e-22 108.6 77 70.1
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.7e-22 107.8 77 70.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 4.9e-22 107.5 77 70.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.9e-22 107.5 77 70.1
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 4.9e-22 107.5 77 71.4
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 6.3e-22 107.1 77 71.4
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.3e-22 106.7 77 68.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.3e-22 106.7 77 66.2
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 8.3e-22 106.7 77 72.7
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.3e-22 106.7 77 70.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.1e-21 106.3 76 71.1
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.4e-21 105.9 77 70.1
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.4e-21 105.9 77 68.8
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.4e-21 105.9 77 70.1
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.4e-21 105.9 77 67.5
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.4e-21 105.9 77 67.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.8e-21 105.5 76 69.7
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.8e-21 105.5 77 68.8
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 3.1e-21 104.8 77 64.9
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 3.1e-21 104.8 77 67.5
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.1e-21 104.8 77 66.2
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 4.1e-21 104.4 77 63.6
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.4e-21 104.0 77 67.5
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 5.4e-21 104.0 77 68.8
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 5.4e-21 104.0 77 70.1
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 5.4e-21 104.0 77 67.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 5.4e-21 104.0 77 67.5
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.0e-21 103.6 77 68.8
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 7.0e-21 103.6 77 72.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 7.0e-21 103.6 77 67.5
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 9.1e-21 103.2 77 66.2
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.2e-20 102.8 77 66.2
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.2e-20 102.8 76 69.7
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.2e-20 102.8 77 67.5
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 1.2e-20 102.8 74 68.9
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.2e-20 102.8 77 67.5
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.2e-20 102.8 77 68.8
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.6e-20 102.4 77 67.5
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 77 66.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.6e-20 102.4 77 66.2
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.6e-20 102.4 77 68.8
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.7e-20 101.7 77 64.9
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.7e-20 101.7 77 71.4
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.7e-20 101.7 77 71.4
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.7e-20 101.7 77 67.5
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.5e-20 101.3 77 64.9
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.5e-20 101.3 77 64.9
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.5e-20 100.9 77 66.2
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.5e-20 100.9 77 67.5
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 4.5e-20 100.9 77 63.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.5e-20 100.9 77 68.8
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 66.2
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 67.5
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 68.8
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 70.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 70.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 70.1
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.9e-20 100.5 77 68.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 5.9e-20 100.5 76 69.7
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 7.7e-20 100.1 77 64.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 7.7e-20 100.1 77 64.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 7.7e-20 100.1 76 69.7
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 7.7e-20 100.1 77 66.2
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 7.7e-20 100.1 76 68.4
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.0e-19 99.8 76 68.4
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.3e-19 99.4 77 64.9
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.3e-19 99.4 77 68.8
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.3e-19 99.4 77 66.2
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.7e-19 99.0 77 66.2
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.7e-19 99.0 77 66.2
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.7e-19 99.0 77 63.6
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.7e-19 99.0 77 62.3
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.7e-19 99.0 77 62.3
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.9e-19 98.2 76 65.8
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.9e-19 98.2 76 67.1
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.9e-19 98.2 76 67.1
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 5.0e-19 97.4 77 63.6
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.0e-19 97.4 77 67.5
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 5.0e-19 97.4 79 65.8
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.6e-19 97.1 77 67.5
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 6.6e-19 97.1 77 67.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 8.6e-19 96.7 77 66.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.1e-18 96.3 79 65.8
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.5e-18 95.9 76 64.5
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.5e-18 95.9 76 64.5
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.5e-18 95.1 76 67.1
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.5e-18 95.1 77 66.2
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.3e-18 94.7 77 64.9
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.3e-18 94.7 77 62.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.2e-18 94.4 77 66.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.2e-18 94.4 76 67.1
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.2e-18 94.4 77 64.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 7.2e-18 93.6 77 64.9
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 9.5e-18 93.2 77 59.7
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.2e-17 92.8 78 62.8
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.2e-17 92.8 77 58.4
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.2e-17 92.8 77 62.3
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.2e-17 92.8 78 65.4
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.8e-17 91.7 77 63.6
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.1e-17 90.5 77 62.3
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 8.0e-17 90.1 77 62.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.4e-16 89.4 77 62.3
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.4e-16 89.4 77 61.0
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 61.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 61.0
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 61.0
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 61.0
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 61.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.8e-16 89.0 77 62.3
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.3e-16 88.6 77 61.0
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 3.0e-16 88.2 77 57.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.8e-16 87.0 77 61.0
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 8.9e-16 86.7 62 71.0
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.2e-15 86.3 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 53.2
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 58.4
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 58.4
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 58.4
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 58.4
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 58.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.2e-15 86.3 77 59.7
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 9.8e-15 83.2 78 55.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.9e-14 81.6 77 54.5
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.4e-13 79.3 77 53.2
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.4e-13 78.6 77 51.9
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 3.5e-12 74.7 77 48.1
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 2.8e-09 65.1 77 40.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.0e-08 63.2 51 62.7
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.8e-08 60.5 51 62.7
arahy.Tifrunner.gnm1.ann1.14M6HG Arachis hypogaea HOM05D002352 ORTHO05D000032 1.2e-07 59.7 56 57.1
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.4e-07 58.2 52 61.5
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 5.8e-07 57.4 56 51.8
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 4.9e-06 54.3 78 39.7


User provided reference genes

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