Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23426 Sapria himalayana HOM05D004596 ORTHO05D005853 7.1e-65 250.4 120 100.0
SHI07929 Sapria himalayana HOM05D004596 ORTHO05D005853 1.3e-42 176.4 104 84.6
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 2.1e-40 169.1 103 79.6
SHI23050 Sapria himalayana HOM05D004596 ORTHO05D005853 3.9e-39 164.9 102 79.4
SHI01996 Sapria himalayana HOM05D004596 ORTHO05D005853 4.8e-37 157.9 97 81.4
CANSAT78G0708 Cannabis sativa HOM05D004596 ORTHO05D005853 9.1e-36 153.7 102 73.5
Gohir.A10G117700 Gossypium hirsutum HOM05D004596 ORTHO05D005853 2.0e-35 152.5 102 69.6
Gohir.D10G149100 Gossypium hirsutum HOM05D004596 ORTHO05D005853 2.0e-35 152.5 102 69.6
Gorai.011G166400 Gossypium raimondii HOM05D004596 ORTHO05D005853 2.0e-35 152.5 102 69.6
Nn6g34173 Nelumbo nucifera HOM05D004596 ORTHO05D005853 2.0e-35 152.5 104 68.3
TAR362G0583 Trochodendron aralioides HOM05D004596 ORTHO05D005853 2.0e-35 152.5 102 72.5
SHI29095 Sapria himalayana HOM05D004596 ORTHO05D005853 2.6e-35 152.1 91 83.5
GSVIVG01018052001 Vitis vinifera HOM05D004596 ORTHO05D005853 2.6e-35 152.1 104 69.2
Dinv44581 Davidia involucrata HOM05D004596 ORTHO05D005853 3.5e-35 151.8 101 71.3
Hma1.2p1_0549F.1_g177080 Hydrangea macrophylla HOM05D004596 ORTHO05D005853 5.9e-35 151.0 101 72.3
Hma1.2p1_1311F.1_g274870 Hydrangea macrophylla HOM05D004596 ORTHO05D005853 5.9e-35 151.0 101 72.3
Manes.15G033300 Manihot esculenta HOM05D004596 ORTHO05D005853 5.9e-35 151.0 102 69.6
Thecc.04G239700 Theobroma cacao HOM05D004596 ORTHO05D005853 5.9e-35 151.0 102 68.6
QL06p000822 Quercus lobata HOM05D004596 ORTHO05D005853 7.7e-35 150.6 102 68.6
COL.COLO4_21575 Corchorus olitorius HOM05D004596 ORTHO05D005853 1.0e-34 150.2 102 69.6
TWI73G0280 Tripterygium wilfordii HOM05D004596 ORTHO05D005853 1.7e-34 149.4 103 68.9
Sc13g0004790 Simmondsia chinensis HOM05D004596 ORTHO05D005853 2.2e-34 149.1 102 69.6
TAR633G0587 Trochodendron aralioides HOM05D004596 ORTHO05D005853 2.2e-34 149.1 102 70.6
Atru.chr4.2330 Acer truncatum HOM05D004596 ORTHO05D005853 5.0e-34 147.9 104 69.2
Aqoxy2G03471 Aquilegia oxysepala HOM05D004596 ORTHO05D005853 5.0e-34 147.9 103 68.0
Eucgr.B00983 Eucalyptus grandis HOM05D004596 ORTHO05D005853 5.0e-34 147.9 104 66.3
PGSC0003DMG400030169 Solanum tuberosum HOM05D004596 ORTHO05D005853 5.0e-34 147.9 101 69.3
Duzib151G0659 Durio zibethinus HOM05D004596 ORTHO05D005853 6.5e-34 147.5 102 66.7
Oeu064241.3 Olea europaea HOM05D004596 ORTHO05D005853 6.5e-34 147.5 101 68.3
ClCG05G004810 Citrullus lanatus HOM05D004596 ORTHO05D005853 8.5e-34 147.1 104 69.2
Cfa008428 Carpinus fangiana HOM05D004596 ORTHO05D005853 1.4e-33 146.4 104 66.3
Haze_11239 Corylus avellana HOM05D004596 ORTHO05D005853 1.4e-33 146.4 104 66.3
Cpa.g.sc44.129 Carica papaya HOM05D004596 ORTHO05D005853 1.9e-33 146.0 102 67.6
CiPaw.01G194700 Carya illinoinensis HOM05D004596 ORTHO05D005853 1.9e-33 146.0 104 66.3
Potri.010G081400 Populus trichocarpa HOM05D004596 ORTHO05D005853 1.9e-33 146.0 102 66.7
Sopen09g031650 Solanum pennellii HOM05D004596 ORTHO05D005853 1.9e-33 146.0 101 67.3
Ciclev10004189m.g Citrus clementina HOM05D004596 ORTHO05D005853 3.2e-33 145.2 102 67.6
Nitab4.5_0000224g0010 Nicotiana tabacum HOM05D004596 ORTHO05D005853 3.2e-33 145.2 101 67.3
RcHm_v2.0_Chr4g0388191 Rosa chinensis HOM05D004596 ORTHO05D005853 3.2e-33 145.2 102 67.6
MD16G1200600 Malus domestica HOM05D004596 ORTHO05D005853 4.2e-33 144.8 102 65.7
Solyc09g082800.3 Solanum lycopersicum HOM05D004596 ORTHO05D005853 4.2e-33 144.8 101 67.3
Actinidia40113 Actinidia chinensis HOM05D004596 ORTHO05D005853 5.5e-33 144.4 103 67.0
MELO3C006495.2 Cucumis melo HOM05D004596 ORTHO05D005853 5.5e-33 144.4 104 67.3
Rhsim04G0196700 Rhododendron simsii HOM05D004596 ORTHO05D005853 7.2e-33 144.1 101 67.3
Sabra10G0061500 Salix brachista HOM05D004596 ORTHO05D005853 7.2e-33 144.1 104 63.5
CAN.G1435.8 Capsicum annuum HOM05D004596 ORTHO05D005853 1.2e-32 143.3 101 66.3
Lj3C724G8 Lonicera japonica HOM05D004596 ORTHO05D005853 1.2e-32 143.3 118 60.2
Nitab4.5_0002652g0030 Nicotiana tabacum HOM05D004596 ORTHO05D005853 1.2e-32 143.3 101 66.3
Peaxi162Scf00316g00026 Petunia axillaris HOM05D004596 ORTHO05D005853 1.2e-32 143.3 101 67.3
Prupe.1G022600 Prunus persica HOM05D004596 ORTHO05D005853 1.2e-32 143.3 102 65.7
Cc03_g04360 Coffea canephora HOM05D004596 ORTHO05D005853 1.6e-32 142.9 103 64.1
CsaV3_3G012850 Cucumis sativus L. HOM05D004596 ORTHO05D005853 1.6e-32 142.9 104 66.3
MD13G1201100 Malus domestica HOM05D004596 ORTHO05D005853 1.6e-32 142.9 104 64.4
Potri.008G158600 Populus trichocarpa HOM05D004596 ORTHO05D005853 1.6e-32 142.9 104 63.5
HanXRQChr10g0294771 Helianthus annuus HOM05D004596 ORTHO05D005853 2.1e-32 142.5 101 67.3
vmacro08381 Vaccinium macrocarpon HOM05D004596 ORTHO05D005853 2.1e-32 142.5 101 67.3
Sabra08G0120900 Salix brachista HOM05D004596 ORTHO05D005853 2.7e-32 142.1 104 62.5
PGR142G3885 Punica granatum HOM05D004596 ORTHO05D005853 3.6e-32 141.7 101 66.3
Actinidia04506 Actinidia chinensis HOM05D004596 ORTHO05D005853 4.7e-32 141.4 103 65.0
Aqoxy7G01427 Aquilegia oxysepala HOM05D004596 ORTHO05D005853 4.7e-32 141.4 101 65.3
CSS0040136 Camellia sinensis var. sinensis HOM05D004596 ORTHO05D005853 4.7e-32 141.4 101 68.3
THA.LOC104826066 Tarenaya hassleriana HOM05D004596 ORTHO05D005853 4.7e-32 141.4 103 66.0
FvH4_4g29700 Fragaria vesca HOM05D004596 ORTHO05D005853 6.1e-32 141.0 118 58.5
FAN07G2222 Fragaria x ananassa HOM05D004596 ORTHO05D005853 6.1e-32 141.0 118 58.5
FAN12G3612 Fragaria x ananassa HOM05D004596 ORTHO05D005853 6.1e-32 141.0 118 58.5
MBI11_g37065_MAGBIO Magnolia biondii HOM05D004596 ORTHO05D005853 6.1e-32 141.0 102 61.8
MSTRG.4066 Avicennia marina HOM05D004596 ORTHO05D005853 1.0e-31 140.2 102 63.7
A10p02640 Brassica napus HOM05D004596 ORTHO05D005853 1.0e-31 140.2 119 58.0
Sp1g03030 Schrenkiella parvula HOM05D004596 ORTHO05D005853 1.0e-31 140.2 118 56.8
Ah.13g071800 Amaranthus hybridus HOM05D004596 ORTHO05D005853 1.4e-31 139.8 97 67.0
BcaC05g24461 Brassica carinata HOM05D004596 ORTHO05D005853 1.4e-31 139.8 119 57.1
C05p02420 Brassica napus HOM05D004596 ORTHO05D005853 1.4e-31 139.8 119 57.1
BolC5t29021H Brassica oleracea HOM05D004596 ORTHO05D005853 1.4e-31 139.8 119 57.1
BraA10t42531Z Brassica rapa HOM05D004596 ORTHO05D005853 1.4e-31 139.8 119 57.1
FvH4_4g01620 Fragaria vesca HOM05D004596 ORTHO05D005853 1.4e-31 139.8 102 65.7
FAN12G2122 Fragaria x ananassa HOM05D004596 ORTHO05D005853 1.4e-31 139.8 102 65.7
FAN17G0232 Fragaria x ananassa HOM05D004596 ORTHO05D005853 1.4e-31 139.8 118 57.6
FAN22G0929 Fragaria x ananassa HOM05D004596 ORTHO05D005853 1.4e-31 139.8 102 65.7
Medtr4g068740 Medicago truncatula HOM05D004596 ORTHO05D005853 1.4e-31 139.8 104 63.5
FAN22G1518 Fragaria x ananassa HOM05D004596 ORTHO05D005853 1.8e-31 139.4 118 57.6
AT1G04210 Arabidopsis thaliana HOM05D004596 ORTHO05D005853 2.3e-31 139.0 118 56.8
Carub.0001s0340 Capsella rubella HOM05D004596 ORTHO05D005853 3.0e-31 138.7 118 56.8
AUR62038647 Chenopodium quinoa HOM05D004596 ORTHO05D005853 3.0e-31 138.7 102 62.7
arahy.Tifrunner.gnm1.ann1.B8VWLB Arachis hypogaea HOM05D004596 ORTHO05D005853 3.9e-31 138.3 104 64.4
FAN17G0661 Fragaria x ananassa HOM05D004596 ORTHO05D005853 3.9e-31 138.3 102 65.7
Hund20642 Selenicereus undatus HOM05D004596 ORTHO05D005853 5.2e-31 137.9 102 64.7
HPP92_023539 Vanilla planifolia HOM05D004596 ORTHO05D005853 5.2e-31 137.9 102 64.7
Lj5g0008006 Lotus japonicus HOM05D004596 ORTHO05D005853 8.8e-31 137.1 104 61.5
AUR62042985 Chenopodium quinoa HOM05D004596 ORTHO05D005853 1.1e-30 136.7 102 62.7
Sed0001129 Sechium edule HOM05D004596 ORTHO05D005853 1.1e-30 136.7 104 63.5
Glyma.20G151300 Glycine max HOM05D004596 ORTHO05D005853 1.5e-30 136.3 104 62.5
Psat7g206760 Pisum sativum HOM05D004596 ORTHO05D005853 1.5e-30 136.3 104 62.5
ATR0665G133 Amborella trichopoda HOM05D004596 ORTHO05D005853 2.0e-30 136.0 103 62.1
AL1G13810 Arabidopsis lyrata HOM05D004596 ORTHO05D005853 2.0e-30 136.0 118 55.9
CARHR003540 Cardamine hirsuta HOM05D004596 ORTHO05D005853 2.0e-30 136.0 118 55.1
Glyma.10G243000 Glycine max HOM05D004596 ORTHO05D005853 2.0e-30 136.0 104 62.5
RcHm_v2.0_Chr4g0437941 Rosa chinensis HOM05D004596 ORTHO05D005853 2.6e-30 135.6 102 62.7
arahy.Tifrunner.gnm1.ann1.0IB5VB Arachis hypogaea HOM05D004596 ORTHO05D005853 3.3e-30 135.2 104 63.5
BcaC07g42199 Brassica carinata HOM05D004596 ORTHO05D005853 3.3e-30 135.2 120 56.7
DCAR_024187 Daucus carota HOM05D004596 ORTHO05D005853 4.4e-30 134.8 103 61.2
Aa31LG1G20620 Aethionema arabicum HOM05D004596 ORTHO05D005853 5.7e-30 134.4 120 53.3
Thecc.08G085900 Theobroma cacao HOM05D004596 ORTHO05D005853 5.7e-30 134.4 102 60.8
TPR.G29898 Trifolium pratense HOM05D004596 ORTHO05D005853 5.7e-30 134.4 104 61.5
BraA09t42132Z Brassica rapa HOM05D004596 ORTHO05D005853 7.4e-30 134.0 119 57.1
PSO461G0024 Papaver somniferum HOM05D004596 ORTHO05D005853 7.4e-30 134.0 105 61.0
SHI34261 Sapria himalayana HOM05D004596 ORTHO05D005853 7.4e-30 134.0 92 68.5
A09p67970 Brassica napus HOM05D004596 ORTHO05D005853 9.7e-30 133.7 119 56.3
BolC8t52768H Brassica oleracea HOM05D004596 ORTHO05D005853 9.7e-30 133.7 119 56.3
CDE06G0929 Ceratophyllum demersum HOM05D004596 ORTHO05D005853 9.7e-30 133.7 125 53.6
C08p52390 Brassica napus HOM05D004596 ORTHO05D005853 1.3e-29 133.3 119 55.5
EL10Ac3g06528 Beta vulgaris HOM05D004596 ORTHO05D005853 1.7e-29 132.9 102 61.8
Ca_20830_v3 Cicer arietinum L. HOM05D004596 ORTHO05D005853 1.7e-29 132.9 104 61.5
PSO210G2132 Papaver somniferum HOM05D004596 ORTHO05D005853 2.2e-29 132.5 105 61.0
Thhalv10006614m.g Eutrema salsugineum HOM05D004596 ORTHO05D005853 2.8e-29 132.1 101 60.4
Migut.N00215 Erythranthe guttata HOM05D004596 ORTHO05D005853 3.7e-29 131.7 103 59.2
Lalb_Chr02g0140731 Lupinus albus HOM05D004596 ORTHO05D005853 3.7e-29 131.7 101 63.4
Hma1.2p1_0549F.1_g177070 Hydrangea macrophylla HOM05D004596 ORTHO05D005853 4.8e-29 131.3 86 74.4
Glyma.14G105001 Glycine max HOM05D004596 ORTHO05D005853 6.3e-29 131.0 107 59.8
ECA234G3873 Erigeron canadensis HOM05D004596 ORTHO05D005853 1.8e-28 129.4 103 57.3
Glyma.10G111500 Glycine max HOM05D004596 ORTHO05D005853 4.1e-28 128.3 104 60.6
VMungo0720G1744 Vigna mungo HOM05D004596 ORTHO05D005853 4.1e-28 128.3 104 57.7
Phvul.007G062700 Phaseolus vulgaris HOM05D004596 ORTHO05D005853 9.1e-28 127.1 104 56.7
SEGI_05896 Sequoiadendron giganteum HOM05D004596 ORTHO05D005853 1.6e-27 126.3 104 56.7
Lsat_1_v5_gn_5_103320 Lactuca sativa HOM05D004596 ORTHO05D005853 2.6e-27 125.6 101 60.4
Os03g0744300 Oryza sativa ssp. japonica HOM05D004596 ORTHO05D005853 6.5e-26 120.9 104 53.8
SEGI_30385 Sequoiadendron giganteum HOM05D004596 ORTHO05D005853 5.5e-25 117.9 104 53.8
Zm00001eb056920 Zea mays HOM05D004596 ORTHO05D005853 6.1e-24 114.4 104 54.8
Pp3c8_22390 Physcomitrium patens HOM05D004596 ORTHO05D005853 6.3e-21 104.4 103 52.4
Mapoly0005s0269 Marchantia polymorpha HOM05D004596 ORTHO05D005853 1.1e-20 103.6 107 49.5
SMO118G0545 Selaginella moellendorffii HOM05D004596 ORTHO05D005853 4.1e-20 101.7 105 49.5
Lsat_1_v5_gn_1_72981 Lactuca sativa HOM05D004596 ORTHO05D005853 2.1e-16 89.4 81 58.0
SHI28614 Sapria himalayana HOM05D004596 ORTHO05D005853 1.0e-15 87.0 55 76.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 7.5e-14 80.9 56 75.0
SHI24701 Sapria himalayana HOM05D004596 ORTHO05D005853 1.4e-07 60.1 35 71.4
CBR_g34713 Chara braunii HOM05D004596 ORTHO05D005853 4.0e-07 58.5 166 26.5
FvH4_4g34550 Fragaria vesca HOM05D000088 ORTHO05D000830 1.2e-06 57.0 95 35.8
FAN12G0654 Fragaria x ananassa HOM05D000088 ORTHO05D000830 1.2e-06 57.0 95 35.8
FAN07G2832 Fragaria x ananassa HOM05D000088 ORTHO05D000830 2.0e-06 56.2 96 33.3
MBI16_g27100_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D000951 7.5e-06 54.3 102 33.3


User provided reference genes

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