Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23045 Sapria himalayana HOM05D004094 ORTHO05D004601 3.8e-50 201.1 93 100.0
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 3.3e-09 65.1 41 63.4
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.1e-08 62.4 41 63.4
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 2.8e-08 62.0 41 63.4
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 3.6e-08 61.6 41 58.5
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.6e-08 61.6 43 58.1
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.6e-08 61.6 43 58.1
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 3.6e-08 61.6 43 58.1
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 6.2e-08 60.8 43 58.1
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 6.2e-08 60.8 43 55.8
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 6.2e-08 60.8 41 58.5
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 6.2e-08 60.8 43 58.1
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 6.2e-08 60.8 43 58.1
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 1.1e-07 60.1 63 47.6
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 1.4e-07 59.7 43 58.1
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 1.8e-07 59.3 43 58.1
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 3.1e-07 58.5 43 55.8
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 3.1e-07 58.5 38 57.9
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 4.0e-07 58.2 41 61.0
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 5.3e-07 57.8 39 61.5
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 6.9e-07 57.4 43 55.8
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 9.0e-07 57.0 39 53.8
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 1.2e-06 56.6 43 51.2
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 1.2e-06 56.6 43 55.8
FAN20G1705 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.5e-06 56.2 43 55.8
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 1.5e-06 56.2 43 60.5
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 1.5e-06 56.2 48 52.1
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 2.0e-06 55.8 43 55.8
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 2.6e-06 55.5 44 56.8
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 4.4e-06 54.7 53 50.9
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 4.4e-06 54.7 43 51.2
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 7.6e-06 53.9 48 47.9
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 7.6e-06 53.9 41 48.8
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 7.6e-06 53.9 43 51.2
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 7.6e-06 53.9 43 51.2
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 9.9e-06 53.5 39 56.4
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 9.9e-06 53.5 43 51.2
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 9.9e-06 53.5 43 51.2
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 9.9e-06 53.5 43 58.1
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 9.9e-06 53.5 41 51.2
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 9.9e-06 53.5 41 51.2


User provided reference genes

Program Settings