Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23020 Sapria himalayana HOM05D003435 ORTHO05D004032 0.0e+00 1416.0 713 100.0
Manes.13G126200 Manihot esculenta HOM05D003435 ORTHO05D004032 1.2e-271 939.9 727 66.6
Sabra07G0036700 Salix brachista HOM05D003435 ORTHO05D004032 2.9e-262 908.7 729 64.5
Dinv39875 Davidia involucrata HOM05D003435 ORTHO05D004032 4.9e-262 907.9 743 63.3
Potri.007G041000 Populus trichocarpa HOM05D003435 ORTHO05D004032 2.4e-261 905.6 743 63.3
TWI53G0909 Tripterygium wilfordii HOM05D003435 ORTHO05D004032 5.4e-261 904.4 726 63.5
Cfa003996 Carpinus fangiana HOM05D003435 ORTHO05D004032 6.0e-260 901.0 743 62.2
TAR376G0307 Trochodendron aralioides HOM05D003435 ORTHO05D004032 9.5e-258 893.6 727 63.5
TAR381G0144 Trochodendron aralioides HOM05D003435 ORTHO05D004032 2.1e-257 892.5 743 62.6
Atru.chr3.398 Acer truncatum HOM05D003435 ORTHO05D004032 2.8e-257 892.1 729 63.0
CiPaw.01G021600 Carya illinoinensis HOM05D003435 ORTHO05D004032 2.8e-257 892.1 743 62.0
Ciclev10024690m.g Citrus clementina HOM05D003435 ORTHO05D004032 3.6e-257 891.7 725 62.3
Manes.12G101600 Manihot esculenta HOM05D003435 ORTHO05D004032 6.2e-257 891.0 744 61.8
Prupe.7G136400 Prunus persica HOM05D003435 ORTHO05D004032 1.8e-256 889.4 743 62.3
CsaV3_2G016800 Cucumis sativus L. HOM05D003435 ORTHO05D004032 4.0e-256 888.3 727 63.0
MD02G1168900 Malus domestica HOM05D003435 ORTHO05D004032 1.2e-255 886.7 743 62.2
Oeu049304.1 Olea europaea HOM05D003435 ORTHO05D004032 7.6e-255 884.0 743 61.5
CSS0011380 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.9e-254 882.1 744 61.8
CSS0024619 Camellia sinensis var. sinensis HOM05D003435 ORTHO05D004032 2.9e-254 882.1 744 61.8
Thecc.01G052400 Theobroma cacao HOM05D003435 ORTHO05D004032 6.4e-254 880.9 747 60.5
Duzib147G1293 Durio zibethinus HOM05D003435 ORTHO05D004032 1.4e-253 879.8 731 61.7
GSVIVG01006575001 Vitis vinifera HOM05D003435 ORTHO05D004032 1.4e-253 879.8 724 63.0
Actinidia16507 Actinidia chinensis HOM05D003435 ORTHO05D004032 4.1e-253 878.2 744 61.0
MD15G1280900 Malus domestica HOM05D003435 ORTHO05D004032 5.4e-253 877.9 742 61.5
Nn5g30194 Nelumbo nucifera HOM05D003435 ORTHO05D004032 3.5e-252 875.2 727 62.4
CANSAT01G2969 Cannabis sativa HOM05D003435 ORTHO05D004032 3.0e-251 872.1 727 61.6
Sed0012547 Sechium edule HOM05D003435 ORTHO05D004032 3.9e-251 871.7 726 62.1
AL5G30740 Arabidopsis lyrata HOM05D003435 ORTHO05D004032 6.6e-251 870.9 727 61.2
Rhsim08G0102200 Rhododendron simsii HOM05D003435 ORTHO05D004032 6.6e-251 870.9 761 60.2
Eucgr.F01659 Eucalyptus grandis HOM05D003435 ORTHO05D004032 8.6e-251 870.5 730 61.6
Gohir.D12G088600 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.1e-250 870.2 731 60.6
Gohir.A12G070200 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.5e-250 869.8 731 60.6
FvH4_1g15690 Fragaria vesca HOM05D003435 ORTHO05D004032 1.9e-250 869.4 743 60.7
RcHm_v2.0_Chr2g0105001 Rosa chinensis HOM05D003435 ORTHO05D004032 1.9e-250 869.4 743 60.8
Carub.0005s1691 Capsella rubella HOM05D003435 ORTHO05D004032 4.3e-250 868.2 727 61.1
PGR119G1381 Punica granatum HOM05D003435 ORTHO05D004032 4.3e-250 868.2 752 59.8
THA.LOC104819223 Tarenaya hassleriana HOM05D003435 ORTHO05D004032 4.3e-250 868.2 729 60.8
FAN23G2700 Fragaria x ananassa HOM05D003435 ORTHO05D004032 7.3e-250 867.5 743 60.4
Sopen02g035220 Solanum pennellii HOM05D003435 ORTHO05D004032 3.6e-249 865.1 743 59.9
Sp5g11620 Schrenkiella parvula HOM05D003435 ORTHO05D004032 6.2e-249 864.4 727 60.7
CARHR160100 Cardamine hirsuta HOM05D003435 ORTHO05D004032 1.1e-248 863.6 727 60.9
Gorai.008G074500 Gossypium raimondii HOM05D003435 ORTHO05D004032 2.4e-248 862.4 741 59.9
Thhalv10010058m.g Eutrema salsugineum HOM05D003435 ORTHO05D004032 6.8e-248 860.9 727 60.5
FAN26G2684 Fragaria x ananassa HOM05D003435 ORTHO05D004032 6.8e-248 860.9 755 59.7
Solyc02g090570.4 Solanum lycopersicum HOM05D003435 ORTHO05D004032 8.9e-248 860.5 743 59.6
AT3G50590 Arabidopsis thaliana HOM05D003435 ORTHO05D004032 2.0e-247 859.4 725 60.8
MSTRG.23766 Avicennia marina HOM05D003435 ORTHO05D004032 5.8e-247 857.8 727 61.2
Cc07_g05840 Coffea canephora HOM05D003435 ORTHO05D004032 9.9e-247 857.1 726 60.1
Glyma.17G176300 Glycine max HOM05D003435 ORTHO05D004032 9.9e-247 857.1 731 61.4
FAN28G0748 Fragaria x ananassa HOM05D003435 ORTHO05D004032 1.7e-246 856.3 749 59.9
Glyma.05G090500 Glycine max HOM05D003435 ORTHO05D004032 1.7e-246 856.3 731 61.1
SalBow5G2384 Salvia bowleyana HOM05D003435 ORTHO05D004032 2.2e-246 855.9 753 59.5
BcaB01g00607 Brassica carinata HOM05D003435 ORTHO05D004032 4.9e-246 854.7 727 60.2
ClCG02G012690 Citrullus lanatus HOM05D003435 ORTHO05D004032 1.1e-245 853.6 765 59.0
Glyma.01G184500 Glycine max HOM05D003435 ORTHO05D004032 1.4e-245 853.2 728 61.5
BolC8t50184H Brassica oleracea HOM05D003435 ORTHO05D004032 2.4e-245 852.4 746 59.1
Eucgr.F02662 Eucalyptus grandis HOM05D003435 ORTHO05D004032 3.2e-245 852.0 730 60.7
C08p25650 Brassica napus HOM05D003435 ORTHO05D004032 5.4e-245 851.3 727 59.7
ECA232G3039 Erigeron canadensis HOM05D003435 ORTHO05D004032 5.4e-245 851.3 727 60.7
A09p43620 Brassica napus HOM05D003435 ORTHO05D004032 7.1e-245 850.9 727 60.0
HanXRQChr14g0430631 Helianthus annuus HOM05D003435 ORTHO05D004032 7.1e-245 850.9 727 60.2
BcaC07g39520 Brassica carinata HOM05D003435 ORTHO05D004032 1.6e-244 849.7 727 59.7
BraA09t39823Z Brassica rapa HOM05D003435 ORTHO05D004032 2.7e-244 849.0 723 60.2
Ca_22188_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 1.7e-243 846.3 729 60.5
EL10Ac2g02707 Beta vulgaris HOM05D003435 ORTHO05D004032 2.3e-243 845.9 734 59.9
Lj2g0013536 Lotus japonicus HOM05D003435 ORTHO05D004032 3.9e-243 845.1 727 61.3
Lj4g0022564 Lotus japonicus HOM05D003435 ORTHO05D004032 3.9e-243 845.1 745 58.9
Aqoxy6G01408_Aqoxy6G01409 Aquilegia oxysepala HOM05D003435 ORTHO05D004032 8.7e-243 844.0 744 59.3
Aa31LG4G18760 Aethionema arabicum HOM05D003435 ORTHO05D004032 1.1e-242 843.6 727 59.8
Phvul.003G245800 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 1.1e-242 843.6 747 59.4
Medtr8g079820 Medicago truncatula HOM05D003435 ORTHO05D004032 1.9e-242 842.8 729 60.5
Nn1g05856 Nelumbo nucifera HOM05D003435 ORTHO05D004032 1.9e-242 842.8 727 59.7
arahy.Tifrunner.gnm1.ann1.IHL9QQ Arachis hypogaea HOM05D003435 ORTHO05D004032 3.3e-242 842.0 741 59.2
Lalb_Chr16g0388371 Lupinus albus HOM05D003435 ORTHO05D004032 3.3e-242 842.0 729 59.9
AUR62031680 Chenopodium quinoa HOM05D003435 ORTHO05D004032 7.3e-242 840.9 735 60.0
AUR62032563 Chenopodium quinoa HOM05D003435 ORTHO05D004032 7.3e-242 840.9 735 60.1
TPR.G19029 Trifolium pratense HOM05D003435 ORTHO05D004032 7.3e-242 840.9 745 59.5
Psat4g087800 Pisum sativum HOM05D003435 ORTHO05D004032 9.6e-242 840.5 745 59.5
Psat2g165400 Pisum sativum HOM05D003435 ORTHO05D004032 5.3e-240 834.7 731 59.9
Lsat_1_v5_gn_4_167420 Lactuca sativa HOM05D003435 ORTHO05D004032 3.4e-239 832.0 727 59.6
PSO541G5504 Papaver somniferum HOM05D003435 ORTHO05D004032 4.4e-239 831.6 748 58.4
PSO675G6314 Papaver somniferum HOM05D003435 ORTHO05D004032 2.2e-238 829.3 748 58.3
Medtr5g017810 Medicago truncatula HOM05D003435 ORTHO05D004032 4.2e-237 825.1 734 58.7
Phvul.002G020500 Phaseolus vulgaris HOM05D003435 ORTHO05D004032 3.5e-236 822.0 726 59.8
Sc03g0001420 Simmondsia chinensis HOM05D003435 ORTHO05D004032 3.9e-235 818.5 747 58.5
SGA_v2.0_scaffold15G07262 Striga asiatica HOM05D003435 ORTHO05D004032 3.9e-235 818.5 752 57.8
Haze_15428 Corylus avellana HOM05D003435 ORTHO05D004032 8.7e-235 817.4 742 58.2
ATR0021G056 Amborella trichopoda HOM05D003435 ORTHO05D004032 6.2e-233 811.2 746 58.0
Aa31LG1G15390 Aethionema arabicum HOM05D003435 ORTHO05D004032 4.5e-231 805.1 727 56.9
Ca_24784_v3 Cicer arietinum L. HOM05D003435 ORTHO05D004032 4.5e-231 805.1 699 60.1
Lalb_Chr09g0323031 Lupinus albus HOM05D003435 ORTHO05D004032 4.2e-229 798.5 672 60.9
DCAR_011292 Daucus carota HOM05D003435 ORTHO05D004032 1.0e-227 793.9 756 56.2
Peaxi162Scf00916g00135 Petunia axillaris HOM05D003435 ORTHO05D004032 3.3e-226 788.9 743 56.4
Lj4C140G3 Lonicera japonica HOM05D003435 ORTHO05D004032 2.6e-223 779.2 751 57.1
COL.COLO4_11380 Corchorus olitorius HOM05D003435 ORTHO05D004032 1.9e-221 773.1 731 57.5
Os09g0407950 Oryza sativa ssp. japonica HOM05D003435 ORTHO05D004032 2.7e-220 769.2 741 55.5
FAN19G0078 Fragaria x ananassa HOM05D003435 ORTHO05D004032 7.9e-220 767.7 743 55.3
Zm00001eb051800 Zea mays HOM05D003435 ORTHO05D004032 1.1e-218 763.8 760 54.1
HPP92_006174 Vanilla planifolia HOM05D003435 ORTHO05D004032 5.1e-211 738.4 639 59.5
HPP92_006187 Vanilla planifolia HOM05D003435 ORTHO05D004032 1.6e-209 733.4 757 52.7
Ah.10g029820 Amaranthus hybridus HOM05D003435 ORTHO05D004032 2.2e-206 723.0 720 54.9
TPR.G31102 Trifolium pratense HOM05D003435 ORTHO05D004032 2.4e-200 703.0 820 49.6
Migut.H00454 Erythranthe guttata HOM05D003435 ORTHO05D004032 6.5e-190 668.3 610 58.2
SEGI_22339 Sequoiadendron giganteum HOM05D003435 ORTHO05D004032 5.3e-184 648.7 740 48.9
unitig_27.g25322 Utricularia gibba HOM05D003435 ORTHO05D004032 2.5e-173 613.2 695 48.6
Mapoly0038s0024 Marchantia polymorpha HOM05D003435 ORTHO05D004032 3.8e-166 589.3 770 44.8
arahy.Tifrunner.gnm1.ann1.ZBDE9H Arachis hypogaea HOM05D003435 ORTHO05D004032 1.7e-161 573.9 418 67.9
Gorai.007G211000 Gossypium raimondii HOM05D003435 ORTHO05D004032 7.0e-160 568.5 560 54.5
Gohir.D11G197100 Gossypium hirsutum HOM05D003435 ORTHO05D004032 1.2e-159 567.8 560 54.3
Hund13567 Selenicereus undatus HOM05D003435 ORTHO05D004032 2.0e-159 567.0 418 67.0
Pp3c3_22080 Physcomitrium patens HOM05D003435 ORTHO05D004032 5.0e-158 562.4 751 43.4
CDE05G0336 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.5e-157 560.8 433 65.4
Nitab4.5_0000961g0120 Nicotiana tabacum HOM05D003435 ORTHO05D004032 5.0e-150 535.8 485 56.7
SMO304G0064 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.5e-143 513.1 775 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2914 Anthoceros agrestis HOM05D003435 ORTHO05D004032 2.3e-142 510.4 787 41.3
VMungo0251G2917 Vigna mungo HOM05D003435 ORTHO05D004032 2.3e-142 510.4 410 64.4
QL06p042317 Quercus lobata HOM05D003435 ORTHO05D004032 3.9e-142 509.6 354 71.8
VMungo1215G0393 Vigna mungo HOM05D003435 ORTHO05D004032 5.1e-134 482.6 353 67.1
QL06p042301 Quercus lobata HOM05D003435 ORTHO05D004032 1.0e-110 405.2 368 57.6
CDE05G0324 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.1e-107 395.2 420 51.4
HPP92_008982 Vanilla planifolia HOM05D003435 ORTHO05D004032 3.2e-104 383.6 716 36.5
CDE05G2519 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 1.3e-97 361.7 241 73.0
Pp3c11_22390 Physcomitrium patens HOM05D000091 ORTHO05D004032 1.3e-94 351.7 412 47.1
Pp3c7_4380 Physcomitrium patens HOM05D000091 ORTHO05D004032 3.0e-94 350.5 459 44.4
CBR_g239 Chara braunii HOM05D003435 ORTHO05D004032 1.5e-90 338.2 818 31.5
Nitab4.5_0000310g0180 Nicotiana tabacum HOM05D003435 ORTHO05D004032 5.3e-83 313.2 306 53.3
Hma1.2p1_1744F.1_g300230 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 4.5e-82 310.1 336 53.0
CBR_g11121 Chara braunii HOM05D003435 ORTHO05D004032 6.5e-81 306.2 861 29.0
vmacro17935 Vaccinium macrocarpon HOM05D003435 ORTHO05D004032 1.6e-79 301.6 306 52.3
CAN.G836.66 Capsicum annuum HOM05D003435 ORTHO05D004032 2.3e-78 297.7 286 54.5
Gorai.007G210900 Gossypium raimondii HOM05D003435 ORTHO05D004032 1.7e-73 281.6 171 77.2
CDE05G0727 Ceratophyllum demersum HOM05D003435 ORTHO05D004032 2.5e-72 277.7 286 51.7
Gohir.D11G197000 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.5e-72 277.7 171 76.0
VMungo0251G1968 Vigna mungo HOM05D003435 ORTHO05D004032 7.2e-72 276.2 315 48.6
Hund13496 Selenicereus undatus HOM05D003435 ORTHO05D004032 1.2e-71 275.4 295 52.2
Gohir.A11G190301 Gossypium hirsutum HOM05D003435 ORTHO05D004032 2.7e-71 274.2 171 74.9
Cpa.g.sc6.380 Carica papaya HOM05D003435 ORTHO05D004032 3.3e-69 267.3 204 65.2
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 6.3e-68 263.1 295 53.6
RhsimUnG0101300 Rhododendron simsii HOM05D003435 ORTHO05D004032 8.5e-65 252.7 299 46.2
VMungo1215G2721 Vigna mungo HOM05D003435 ORTHO05D004032 1.2e-61 242.3 263 53.6
Hma1.2p1_0767F.1_g215490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 8.9e-54 216.1 203 53.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 8.9e-46 189.5 165 60.6
Cpa.g.sc6.378 Carica papaya HOM05D003435 ORTHO05D004032 1.4e-43 182.2 179 52.5
SMO304G0043 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 3.2e-43 181.0 420 33.3
Rhsim03G0142900 Rhododendron simsii HOM05D000230 ORTHO05D000176 1.7e-33 148.7 108 70.4
Hma1.2p1_1179F.1_g264490 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 2.5e-32 144.8 111 61.3
Hma1.2p1_0979F.1_g243630 Hydrangea macrophylla HOM05D003435 ORTHO05D004032 5.6e-32 143.7 104 63.5
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 4.4e-29 134.0 103 66.0
Duzib187G1677 Durio zibethinus HOM05D003435 ORTHO05D004032 2.7e-18 98.2 69 63.8
Rhsim03G0142800 Rhododendron simsii HOM05D003435 ORTHO05D004032 6.0e-18 97.1 157 39.5
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.9e-17 94.4 60 71.7
Peaxi162Scf00691g00516 Petunia axillaris HOM05D003435 ORTHO05D004032 1.9e-16 92.0 58 72.4
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 1.2e-15 89.4 60 71.7
Psat5g173160 Pisum sativum HOM05D003435 ORTHO05D020975 1.5e-13 82.4 100 53.0
Psat5g173200 Pisum sativum HOM05D000518 ORTHO05D000737 4.4e-13 80.9 100 50.0
Glyma.11G057700 Glycine max HOM05D003435 ORTHO05D004032 4.6e-10 70.9 46 69.6
Psat0ss9382g0080 Pisum sativum HOM05D003435 ORTHO05D004032 3.0e-09 68.2 128 42.2
SHI22841 Sapria himalayana HOM05D000002 ORTHO05D000001 6.6e-09 67.0 34 100.0
Gohir.A11G190351 Gossypium hirsutum HOM05D003435 ORTHO05D004032 6.2e-07 60.5 67 49.3
SMO014G0036 Selaginella moellendorffii HOM05D003435 ORTHO05D004032 1.8e-06 58.9 46 54.3


User provided reference genes

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