Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22765 Sapria himalayana HOM05D004573 ORTHO05D367504 7.4e-144 513.8 258 100.0
TAR623G0262 Trochodendron aralioides HOM05D004573 ORTHO05D005764 1.5e-11 74.3 93 43.0
CiPaw.01G288400 Carya illinoinensis HOM05D004573 ORTHO05D005764 1.7e-10 70.9 93 41.9
Manes.04G070300 Manihot esculenta HOM05D004573 ORTHO05D005764 2.2e-10 70.5 93 43.0
TWI63G1141 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 2.8e-10 70.1 114 36.8
Gohir.D05G301500 Gossypium hirsutum HOM05D004573 ORTHO05D005764 4.8e-10 69.3 102 38.2
MBI14_g37190_MAGBIO Magnolia biondii HOM05D004573 ORTHO05D005764 4.8e-10 69.3 124 37.1
arahy.Tifrunner.gnm1.ann1.3B46PQ Arachis hypogaea HOM05D004573 ORTHO05D005764 6.3e-10 68.9 93 40.9
arahy.Tifrunner.gnm1.ann1.T39EX2 Arachis hypogaea HOM05D004573 ORTHO05D005764 6.3e-10 68.9 93 40.9
Gorai.009G319600 Gossypium raimondii HOM05D004573 ORTHO05D005764 6.3e-10 68.9 102 38.2
Gohir.A05G301800 Gossypium hirsutum HOM05D004573 ORTHO05D005764 8.3e-10 68.6 93 38.7
QL08p059630 Quercus lobata HOM05D004573 ORTHO05D005764 8.3e-10 68.6 93 41.9
Ca_05890_v3 Cicer arietinum L. HOM05D004573 ORTHO05D005764 1.8e-09 67.4 117 39.3
Lalb_Chr04g0251191 Lupinus albus HOM05D004573 ORTHO05D005764 1.8e-09 67.4 93 41.9
Prupe.2G236800 Prunus persica HOM05D004573 ORTHO05D005764 1.8e-09 67.4 93 39.8
Aqoxy4G02884 Aquilegia oxysepala HOM05D004573 ORTHO05D005764 2.4e-09 67.0 92 39.1
Cfa001465 Carpinus fangiana HOM05D004573 ORTHO05D005764 2.4e-09 67.0 126 37.3
Potri.010G202800 Populus trichocarpa HOM05D004573 ORTHO05D005764 2.4e-09 67.0 93 40.9
RcHm_v2.0_Chr1g0367761 Rosa chinensis HOM05D004573 ORTHO05D005764 2.4e-09 67.0 93 39.8
AUR62012098 Chenopodium quinoa HOM05D004573 ORTHO05D005764 4.1e-09 66.2 93 39.8
AUR62039368 Chenopodium quinoa HOM05D004573 ORTHO05D005764 4.1e-09 66.2 93 39.8
FAN03G1996 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.2e-08 64.7 93 38.7
FAN03G2998 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.2e-08 64.7 93 38.7
FAN10G1883 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.2e-08 64.7 93 38.7
Lj8C83T9 Lonicera japonica HOM05D004573 ORTHO05D005764 1.2e-08 64.7 125 34.4
Haze_17077 Corylus avellana HOM05D004573 ORTHO05D005764 1.6e-08 64.3 126 36.5
Medtr5g079920 Medicago truncatula HOM05D004573 ORTHO05D005764 1.6e-08 64.3 117 38.5
FAN01G0989 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.0e-08 63.9 96 37.5
Psat2g041280 Pisum sativum HOM05D004573 ORTHO05D005764 2.0e-08 63.9 117 37.6
Duzib114G0300 Durio zibethinus HOM05D004573 ORTHO05D005764 2.7e-08 63.5 107 34.6
FvH4_7g22680 Fragaria vesca HOM05D004573 ORTHO05D005764 2.7e-08 63.5 93 38.7
FAN01G2561 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.7e-08 63.5 93 38.7
PGR044G2694 Punica granatum HOM05D004573 ORTHO05D005764 2.7e-08 63.5 116 37.1
Hund13770 Selenicereus undatus HOM05D004573 ORTHO05D005764 2.7e-08 63.5 117 30.8
Thecc.10G040400 Theobroma cacao HOM05D004573 ORTHO05D005764 2.7e-08 63.5 93 37.6
TWI38G0403 Tripterygium wilfordii HOM05D004573 ORTHO05D005764 2.7e-08 63.5 93 39.8
Atru.chr12.431 Acer truncatum HOM05D004573 ORTHO05D005764 3.5e-08 63.2 93 37.6
Peaxi162Scf00658g00843 Petunia axillaris HOM05D004573 ORTHO05D005764 3.5e-08 63.2 102 35.3
MD07G1200100 Malus domestica HOM05D004573 ORTHO05D005764 4.5e-08 62.8 93 37.6
TPR.G3490 Trifolium pratense HOM05D004573 ORTHO05D005764 4.5e-08 62.8 115 37.4
CANSAT11G1219 Cannabis sativa HOM05D004573 ORTHO05D005764 5.9e-08 62.4 122 34.4
Dinv26026 Davidia involucrata HOM05D004573 ORTHO05D005764 5.9e-08 62.4 107 36.4
GSVIVG01016531001 Vitis vinifera HOM05D004573 ORTHO05D005764 5.9e-08 62.4 116 35.3
Glyma.14G068200 Glycine max HOM05D004573 ORTHO05D005764 7.7e-08 62.0 93 37.6
LjContig00141g0003376 Lotus japonicus HOM05D004573 ORTHO05D005764 7.7e-08 62.0 93 39.8
Nn2g11126 Nelumbo nucifera HOM05D004573 ORTHO05D005764 7.7e-08 62.0 114 35.1
Carub.0005s2220 Capsella rubella HOM05D004573 ORTHO05D005764 1.0e-07 61.6 93 35.5
FAN06G1159 Fragaria x ananassa HOM05D004573 ORTHO05D005764 1.0e-07 61.6 93 37.6
Glyma.02G248300 Glycine max HOM05D004573 ORTHO05D005764 1.3e-07 61.2 93 39.8
CSS0014274 Camellia sinensis var. sinensis HOM05D004573 ORTHO05D005764 1.7e-07 60.8 95 38.9
Sabra10G0156500 Salix brachista HOM05D004573 ORTHO05D005764 1.7e-07 60.8 93 36.6
CSS0013300 Camellia sinensis var. sinensis HOM05D004573 ORTHO05D005764 2.2e-07 60.5 93 38.7
MD01G1135400 Malus domestica HOM05D004573 ORTHO05D005764 2.2e-07 60.5 93 36.6
Eucgr.J00002 Eucalyptus grandis HOM05D004573 ORTHO05D005764 2.9e-07 60.1 93 36.6
FAN06G2378 Fragaria x ananassa HOM05D004573 ORTHO05D005764 2.9e-07 60.1 93 35.5
CARHR165530 Cardamine hirsuta HOM05D004573 ORTHO05D005764 3.8e-07 59.7 93 35.5
Ciclev10030556m.g Citrus clementina HOM05D004573 ORTHO05D005764 3.8e-07 59.7 93 38.7
PSO384G3826 Papaver somniferum HOM05D004573 ORTHO05D005764 3.8e-07 59.7 102 35.3
Ah.16g102370 Amaranthus hybridus HOM05D004573 ORTHO05D005764 5.0e-07 59.3 93 35.5
VMungo0647G0005 Vigna mungo HOM05D004573 ORTHO05D005764 5.0e-07 59.3 116 34.5
PSO339G0476 Papaver somniferum HOM05D004573 ORTHO05D005764 6.5e-07 58.9 102 35.3
Actinidia29230 Actinidia chinensis HOM05D004573 ORTHO05D005764 1.1e-06 58.2 93 38.7
EL10Ac2g04737 Beta vulgaris HOM05D004573 ORTHO05D005764 1.1e-06 58.2 93 34.4
ClCG07G003410 Citrullus lanatus HOM05D004573 ORTHO05D005764 1.1e-06 58.2 109 32.1
Migut.F01444 Erythranthe guttata HOM05D004573 ORTHO05D005764 1.1e-06 58.2 102 38.2
HPP92_001680 Vanilla planifolia HOM05D004573 ORTHO05D005764 1.1e-06 58.2 101 35.6
Oeu053152.1 Olea europaea HOM05D004573 ORTHO05D005764 1.5e-06 57.8 94 38.3
BcaC07g39867 Brassica carinata HOM05D004573 ORTHO05D005764 1.9e-06 57.4 93 35.5
C08p30730 Brassica napus HOM05D004573 ORTHO05D005764 1.9e-06 57.4 93 35.5
BolC8t50690H Brassica oleracea HOM05D004573 ORTHO05D005764 1.9e-06 57.4 93 35.5
Cpa.g.sc1.417 Carica papaya HOM05D004573 ORTHO05D005764 1.9e-06 57.4 93 35.5
DCAR_027609 Daucus carota HOM05D004573 ORTHO05D005764 1.9e-06 57.4 102 37.3
SGA_v2.0_scaffold2G00997 Striga asiatica HOM05D004573 ORTHO05D005764 1.9e-06 57.4 117 35.0
Gorai.012G070900 Gossypium raimondii HOM05D004573 ORTHO05D005764 2.5e-06 57.0 93 37.6
Zm00001eb260950 Zea mays HOM05D004573 ORTHO05D005764 2.5e-06 57.0 93 38.7
ATR0559G310 Amborella trichopoda HOM05D004573 ORTHO05D005764 3.2e-06 56.6 102 34.3
AL5G36630 Arabidopsis lyrata HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 35.5
MSTRG.284 Avicennia marina HOM05D004573 ORTHO05D005764 4.2e-06 56.2 103 39.8
BcaB01g00096 Brassica carinata HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 35.5
A09p48420 Brassica napus HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 34.4
BraA09t40294Z Brassica rapa HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 34.4
Sp5g06990 Schrenkiella parvula HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 35.5
Sed0007030 Sechium edule HOM05D004573 ORTHO05D005764 4.2e-06 56.2 93 35.5
Actinidia13882 Actinidia chinensis HOM05D004573 ORTHO05D005764 5.5e-06 55.8 93 37.6
CAN.G55.6 Capsicum annuum HOM05D004573 ORTHO05D005764 5.5e-06 55.8 102 35.3
Sc10g0001660 Simmondsia chinensis HOM05D004573 ORTHO05D005764 5.5e-06 55.8 93 35.5


User provided reference genes

Program Settings