Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 7.7e-127 457.2 241 100.0
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.1e-53 214.2 188 66.5
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 3.3e-53 212.6 151 74.2
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.3e-52 210.7 161 70.2
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.6e-52 210.3 187 65.8
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.6e-52 210.3 187 64.2
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 3.7e-52 209.1 187 64.7
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 8.1e-52 208.0 187 64.2
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 8.1e-52 208.0 161 69.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 1.4e-51 207.2 187 65.2
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.4e-51 207.2 193 61.7
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.8e-51 206.8 151 73.5
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.8e-51 206.8 187 64.7
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.8e-51 206.8 187 64.2
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.8e-51 206.8 161 68.3
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 2.4e-51 206.5 187 64.7
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 5.3e-51 205.3 177 66.1
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 6.9e-51 204.9 187 64.7
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 9.0e-51 204.5 161 68.3
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 9.0e-51 204.5 187 63.6
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 1.2e-50 204.1 161 68.3
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.2e-50 204.1 192 62.5
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.2e-50 204.1 187 63.1
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.5e-50 203.8 187 64.7
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.5e-50 203.8 180 66.1
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 2.0e-50 203.4 187 63.6
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 3.4e-50 202.6 192 58.3
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 3.4e-50 202.6 188 62.2
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 3.4e-50 202.6 131 78.6
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 4.5e-50 202.2 187 62.0
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 4.5e-50 202.2 188 62.2
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 4.5e-50 202.2 187 63.1
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 4.5e-50 202.2 192 61.5
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 4.5e-50 202.2 161 66.5
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 7.6e-50 201.4 157 70.1
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.3e-49 200.7 202 59.9
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.3e-49 200.7 188 62.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.7e-49 200.3 188 62.2
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.7e-49 200.3 161 65.2
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.9e-49 199.5 187 62.6
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.9e-49 199.5 222 54.1
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 4.9e-49 198.7 161 64.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 6.5e-49 198.4 161 65.8
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 6.5e-49 198.4 161 64.6
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 6.5e-49 198.4 161 65.2
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 8.4e-49 198.0 161 65.2
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 8.4e-49 198.0 161 65.2
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 8.4e-49 198.0 192 60.9
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.1e-48 197.6 192 60.9
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.4e-48 197.2 161 64.0
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 1.4e-48 197.2 161 64.0
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 1.4e-48 197.2 161 64.0
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.4e-48 197.2 161 64.0
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 1.4e-48 197.2 161 65.2
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.9e-48 196.8 161 64.0
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.5e-48 196.4 187 61.0
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 3.2e-48 196.1 187 62.0
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 3.2e-48 196.1 187 59.9
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 3.2e-48 196.1 187 59.9
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 4.2e-48 195.7 187 59.9
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 5.5e-48 195.3 159 64.2
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 5.5e-48 195.3 187 59.9
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.5e-48 195.3 196 57.1
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.5e-48 195.3 196 57.1
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.5e-48 195.3 196 57.1
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 7.1e-48 194.9 187 59.4
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 7.1e-48 194.9 187 61.5
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 9.3e-48 194.5 187 59.9
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 9.3e-48 194.5 187 59.9
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 9.3e-48 194.5 161 64.0
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.2e-47 194.1 161 64.0
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.2e-47 194.1 188 59.0
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.2e-47 194.1 192 57.8
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.2e-47 194.1 161 64.0
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.1e-47 193.4 187 57.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.1e-47 193.4 161 65.2
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 2.7e-47 193.0 151 68.2
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.7e-47 193.0 161 64.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 3.5e-47 192.6 192 57.8
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.0e-46 191.0 185 57.8
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.8e-46 190.3 146 67.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 3.0e-46 189.5 194 58.2
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.0e-46 189.5 200 54.5
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 3.9e-46 189.1 161 61.5
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 5.1e-46 188.7 187 59.9
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 6.7e-46 188.3 195 56.4
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 1.1e-45 187.6 176 59.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 9.6e-45 184.5 147 66.7
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.3e-44 184.1 158 64.6
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.1e-44 183.3 213 51.2
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.4e-43 180.6 167 61.7
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 3.1e-43 179.5 161 59.0
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 4.1e-43 179.1 210 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 5.3e-43 178.7 161 58.4
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.0e-41 174.5 198 55.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.7e-41 173.7 131 68.7
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.7e-41 173.7 161 57.1
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 1.4e-40 170.6 241 46.1
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 5.5e-40 168.7 157 63.1
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.2e-39 167.5 245 43.3
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 2.7e-39 166.4 161 56.5
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 1.8e-38 163.7 161 55.3
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 3.0e-38 162.9 161 55.3
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 5.5e-32 142.1 161 51.6
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.6e-31 140.6 86 82.6
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 3.6e-31 139.4 112 70.5
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 6.1e-31 138.7 112 70.5
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 7.9e-31 138.3 158 55.1
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.4e-30 137.5 87 80.5
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 1.1e-29 134.4 104 74.0
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.3e-29 132.9 109 67.9
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 4.8e-28 129.0 112 67.0
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 8.2e-28 128.3 129 58.9
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.4e-26 122.9 164 45.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 7.7e-26 121.7 147 46.3
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 5.2e-22 109.0 172 40.1
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.2e-18 97.8 160 44.4
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.0e-17 94.7 191 35.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 6.5e-17 92.0 56 80.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 8.5e-17 91.7 106 54.7
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.4e-16 88.2 53 83.0
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 1.6e-15 87.4 48 83.3
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 2.7e-15 86.7 49 81.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.7e-15 86.7 49 79.6
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.4e-14 84.3 100 50.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 2.3e-14 83.6 49 77.6
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.8e-11 73.9 53 60.4
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 4.5e-10 69.3 57 68.4


User provided reference genes

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